scPDB - 3owj entry

Protein Data Bank Entry:

PDB ID : 3owj

Resolution :1.850 Å

Experimental Method : X-ray

Deposition Date : 2010-09-20

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Casein kinase II subunit alpha
ID:	CSK21_HUMAN
AC:	P68400
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.7.11.1

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	28.275
Number of residues:	23
Including
Standard Amino Acids:	21
Non Standard Amino Acids:	0
Water Molecules:	2
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.238	384.750

% Hydrophobic	% Polar
59.65	40.35
According to VolSite

Ligand :

HET Code:	1EL
Formula:	C17H14N2O2
Molecular weight:	278.305 g/mol
DrugBank ID:	-
Buried Surface Area:	55.38 %
Polar Surface area:	65.45 Å2

Number of
H-Bond Acceptors:	3
H-Bond Donors:	2
Rings:	4
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	0

Mass center Coordinates

X	Y	Z
22.6956	7.43162	15.5049

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C15	CD1	LEU- 45	4.01	0	Hydrophobic	false
C9	CG1	VAL- 53	3.8	0	Hydrophobic	false
C14	CG1	VAL- 53	3.85	0	Hydrophobic	false
C10	CG2	VAL- 53	3.59	0	Hydrophobic	false
C1	CG2	VAL- 66	3.6	0	Hydrophobic	false
C6	CG1	VAL- 66	3.85	0	Hydrophobic	false
C2	CD1	ILE- 95	4.06	0	Hydrophobic	false
C3	CG1	ILE- 95	4.4	0	Hydrophobic	false
C2	CB	PHE- 113	4.23	0	Hydrophobic	false
O1	N	VAL- 116	3.14	146.32	H-Bond (Protein Donor)	false
C15	CE	MET- 163	3.64	0	Hydrophobic	false
C3	CG2	ILE- 174	4	0	Hydrophobic	false
C8	CD1	ILE- 174	3.57	0	Hydrophobic	false
C11	CB	ASP- 175	4.46	0	Hydrophobic	false
N7	O	HOH- 429	3.21	157.37	H-Bond (Ligand Donor)	false