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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2xae2XAKinesin-like protein KIF11

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2xae2XAKinesin-like protein KIF11/1.000
4bbgV02Kinesin-like protein KIF11/0.632
2x7eX7EKinesin-like protein KIF11/0.611
2g1qN9HKinesin-like protein KIF11/0.610
3kenZZDKinesin-like protein KIF11/0.591
2iehMOYKinesin-like protein KIF11/0.589
2wogZZDKinesin-like protein KIF11/0.580
1x88NATKinesin-like protein KIF11/0.574
4a51DQ8Kinesin-like protein KIF11/0.572
3k5eK5EKinesin-like protein KIF11/0.560
2x7dEGBKinesin-like protein KIF11/0.558
2x2rX2OKinesin-like protein KIF11/0.553
2x7cKZ9Kinesin-like protein KIF11/0.547
2fme3QCKinesin-like protein KIF11/0.544
2q2zMKKKinesin-like protein KIF11/0.540
3k3bL31Kinesin-like protein KIF11/0.528
2gm12AZKinesin-like protein KIF11/0.525
1q0bNATKinesin-like protein KIF11/0.509
1fvt106Cyclin-dependent kinase 22.7.11.220.496
3ddqRRCCyclin-dependent kinase 22.7.11.220.494
4cfnJYMCyclin-dependent kinase 22.7.11.220.489
2vv9IM9Cyclin-dependent kinase 22.7.11.220.486
2r3kSCQCyclin-dependent kinase 22.7.11.220.483
4erwSTUCyclin-dependent kinase 22.7.11.220.483
2btsU32Cyclin-dependent kinase 22.7.11.220.480
2vu3LZECyclin-dependent kinase 22.7.11.220.480
4a5yG7XKinesin-like protein KIF11/0.480
4fkj11KCyclin-dependent kinase 22.7.11.220.480
1oguST8Cyclin-dependent kinase 22.7.11.220.479
2b55D31Cyclin-dependent kinase 22.7.11.220.478
3lfnA27Cyclin-dependent kinase 22.7.11.220.478
4gii0X6Non-receptor tyrosine-protein kinase TYK22.7.10.20.478
4fkw62KCyclin-dependent kinase 22.7.11.220.477
3rk708ZCyclin-dependent kinase 22.7.11.220.476
1h1pCMGCyclin-dependent kinase 22.7.11.220.475
1ke6LS2Cyclin-dependent kinase 22.7.11.220.475
1pxpCK8Cyclin-dependent kinase 22.7.11.220.475
4ek610KCyclin-dependent kinase 22.7.11.220.474
4eomATPCyclin-dependent kinase 22.7.11.220.474
2iw84SPCyclin-dependent kinase 22.7.11.220.472
2j9mPY8Cyclin-dependent kinase 22.7.11.220.472
2yj5ATPCopper-transporting ATPase/0.472
4feq0T8Tyrosine-protein kinase receptor TYRO32.7.10.10.472
1w2xRCPAcetyl-CoA carboxylase/0.471
3rk507ZCyclin-dependent kinase 22.7.11.220.471
2w17I19Cyclin-dependent kinase 22.7.11.220.470
4acm7YGCyclin-dependent kinase 22.7.11.220.470
1ke7LS3Cyclin-dependent kinase 22.7.11.220.469
4fkr45KCyclin-dependent kinase 22.7.11.220.469
4otiMI1Serine/threonine-protein kinase N1/0.469
4d9t0JGRibosomal protein S6 kinase alpha-32.7.11.10.468
4ftt6HKSerine/threonine-protein kinase Chk12.7.11.10.468
3iggEFQCyclin-dependent kinase 22.7.11.220.467
3rni21ZCyclin-dependent kinase 22.7.11.220.467
2phkATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform2.7.11.190.466
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.466
3rjc06ZCyclin-dependent kinase 22.7.11.220.466
2a1mCAMCamphor 5-monooxygenase1.14.15.10.465
3sqq99ZCyclin-dependent kinase 22.7.11.220.465
4kikKSAInhibitor of nuclear factor kappa-B kinase subunit beta2.7.11.100.465
2ccu2D9Heat shock protein HSP 90-alpha/0.464
3r6xX84Cyclin-dependent kinase 22.7.11.220.464
1vyzN5BCyclin-dependent kinase 22.7.11.220.463
2r3lSCWCyclin-dependent kinase 22.7.11.220.463
3kljFADNADH-rubredoxin oxidoreductase1.18.1.10.463
3my5RFZCyclin-dependent kinase 22.7.11.220.463
4l445FIRibosomal protein S6 kinase beta-12.7.11.10.463
1fm4DXCMajor pollen allergen Bet v 1-L/0.462
2x1nX1NCyclin-dependent kinase 22.7.11.220.462
4fkt48KCyclin-dependent kinase 22.7.11.220.462
4ivd15TTyrosine-protein kinase JAK1/0.462
2fvdLIACyclin-dependent kinase 22.7.11.220.461
4fkpLS5Cyclin-dependent kinase 22.7.11.220.461
4o0wADNAurora kinase A2.7.11.10.461
1aq1STUCyclin-dependent kinase 22.7.11.220.460
1ke5LS1Cyclin-dependent kinase 22.7.11.220.460
1pxoCK7Cyclin-dependent kinase 22.7.11.220.460
3qzgX67Cyclin-dependent kinase 22.7.11.220.460
3ral04ZCyclin-dependent kinase 22.7.11.220.460
4aguD15Cyclin-dependent kinase-like 1/0.460
4eos1ROCyclin-dependent kinase 22.7.11.220.460
1oiuN76Cyclin-dependent kinase 22.7.11.220.459
1qpjSTUTyrosine-protein kinase Lck2.7.10.20.459
2cduFADNADH oxidase/0.459
2hy0306Serine/threonine-protein kinase Chk12.7.11.10.459
2r3jSCJCyclin-dependent kinase 22.7.11.220.459
4dit0KDGlycogen synthase kinase-3 beta2.7.11.260.459
4enhFVXCholesterol 24-hydroxylase/0.459
4gj20XHNon-receptor tyrosine-protein kinase TYK22.7.10.20.459
1pyePM1Cyclin-dependent kinase 22.7.11.220.458
2b9jADPMitogen-activated protein kinase FUS32.7.11.240.458
2btrU73Cyclin-dependent kinase 22.7.11.220.458
3r1yX76Cyclin-dependent kinase 22.7.11.220.458
4ek816KCyclin-dependent kinase 22.7.11.220.458
2c5yMTWCyclin-dependent kinase 22.7.11.220.457
2wipP49Cyclin-dependent kinase 22.7.11.220.457
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.457
3rpo24ZCyclin-dependent kinase 22.7.11.220.457
4ez30S0Cyclin-dependent kinase 22.7.11.220.457
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.457
2yee2ECHeat shock protein HSP 90-alpha/0.456
3qxpX64Cyclin-dependent kinase 22.7.11.220.456
3r8zZ63Cyclin-dependent kinase 22.7.11.220.456
4fsnA58Serine/threonine-protein kinase Chk12.7.11.10.456
2wi1ZZ2Heat shock protein HSP 90-alpha/0.455
2yekEAMBromodomain-containing protein 2/0.455
3lxiCAMCytochrome P450/0.455
3qrtX14Cyclin-dependent kinase 22.7.11.220.455
3qu0X40Cyclin-dependent kinase 22.7.11.220.455
3r8lZ30Cyclin-dependent kinase 22.7.11.220.455
3rkb12ZCyclin-dependent kinase 22.7.11.220.455
3rpr25ZCyclin-dependent kinase 22.7.11.220.455
3s00Z60Cyclin-dependent kinase 22.7.11.220.455
3t80CTN2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase4.6.1.120.455
4bgh3I6Cyclin-dependent kinase 22.7.11.220.455
4l435FIRibosomal protein S6 kinase beta-12.7.11.10.455
2hxl422Serine/threonine-protein kinase Chk12.7.11.10.454
2uzbC75Cyclin-dependent kinase 22.7.11.220.454
3a8wATPProtein kinase C iota type2.7.11.130.454
3o0g3O0Cyclin-dependent-like kinase 52.7.11.10.454
3qp0NI8Gag-Pol polyprotein3.4.23.160.454
3qtqX35Cyclin-dependent kinase 22.7.11.220.454
4eoi1ROCyclin-dependent kinase 22.7.11.220.454
4fsmHK1Serine/threonine-protein kinase Chk12.7.11.10.454
4n6hEJ4Delta-type opioid receptor/0.454
1fvv107Cyclin-dependent kinase 22.7.11.220.453
1q1rFADPutidaredoxin reductase1.18.1.50.453
2ym6YM6Serine/threonine-protein kinase Chk12.7.11.10.453
3aidARQGag-Pol polyprotein3.4.23.160.453
3qqlX03Cyclin-dependent kinase 22.7.11.220.453
3r7iX9ICyclin-dependent kinase 22.7.11.220.453
3uli1N3Cyclin-dependent kinase 22.7.11.220.453
1h1r6CPCyclin-dependent kinase 22.7.11.220.452
1y91CT9Cyclin-dependent kinase 22.7.11.220.452
2cchATPCyclin-dependent kinase 22.7.11.220.452
2cgu3A3Serine/threonine-protein kinase Chk12.7.11.10.452
3fz1B98Cyclin-dependent kinase 22.7.11.220.452
3qtsX46Cyclin-dependent kinase 22.7.11.220.452
4fks46KCyclin-dependent kinase 22.7.11.220.452
4yswNAIXanthine dehydrogenase/oxidase/0.452
1v1k3FPCyclin-dependent kinase 22.7.11.220.451
2hog710Serine/threonine-protein kinase Chk12.7.11.10.451
2uzlC94Cyclin-dependent kinase 22.7.11.220.451
3qtuX44Cyclin-dependent kinase 22.7.11.220.451
3r9hZ67Cyclin-dependent kinase 22.7.11.220.451
4enxZ20Serine/threonine-protein kinase pim-12.7.11.10.451
4fad0TBPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.451
4m52FADDihydrolipoyl dehydrogenase1.8.1.40.451
4v12POGMaoC like domain protein/0.451
1gih1PUCyclin-dependent kinase 22.7.11.220.450
1sm2STUTyrosine-protein kinase ITK/TSK2.7.10.20.450
1tj0FADBifunctional protein PutA1.5.5.20.450
2c4g514Cyclin-dependent kinase 22.7.11.220.450
2puuG2GMitogen-activated protein kinase 14/0.450
2r3r6SCCyclin-dependent kinase 22.7.11.220.450
2uxuNARHTH-type transcriptional regulator TtgR/0.450
2w05FRTCyclin-dependent kinase 22.7.11.220.450
2w1hL0FCyclin-dependent kinase 22.7.11.220.450
2wtcVGMSerine/threonine-protein kinase Chk22.7.11.10.450
3ezvEZVCyclin-dependent kinase 22.7.11.220.450
3lfsA07Cyclin-dependent kinase 22.7.11.220.450
2gr1FADFerredoxin reductase/0.449
3d75NBBPheromone-binding protein ASP1/0.449
3lfqA28Cyclin-dependent kinase 22.7.11.220.449
3p7bP7BMitogen-activated protein kinase 14/0.449
3qtwX3ACyclin-dependent kinase 22.7.11.220.449
3r1qX75Cyclin-dependent kinase 22.7.11.220.449
3r9dX6BCyclin-dependent kinase 22.7.11.220.449
4fsrHKCSerine/threonine-protein kinase Chk12.7.11.10.449
1q1wFADPutidaredoxin reductase1.18.1.50.448
2q631UNGag-Pol polyprotein3.4.23.160.448
2qi3MZ5Gag-Pol polyprotein/0.448
2vtnLZ7Cyclin-dependent kinase 22.7.11.220.448
2vtqLZACyclin-dependent kinase 22.7.11.220.448
3gi3B10Mitogen-activated protein kinase 14/0.448
3py0SU9Cyclin-dependent kinase 22.7.11.220.448
3s0o50ZCyclin-dependent kinase 22.7.11.220.448
4ktkKTKCytochrome P450/0.448
4la7A1OAbscisic acid receptor PYL2/0.448
4oacADPProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.448
5dr9SKEAurora kinase A2.7.11.10.448
1m9k7NINitric oxide synthase, endothelial1.14.13.390.447
2brbPFQSerine/threonine-protein kinase Chk12.7.11.10.447
2c5nCK8Cyclin-dependent kinase 22.7.11.220.447
2gr0FADFerredoxin reductase/0.447
2jkkBI9Focal adhesion kinase 12.7.10.20.447
2xmyCDKCyclin-dependent kinase 22.7.11.220.447
3e7gAT2Nitric oxide synthase, inducible1.14.13.390.447
3s1h56ZCyclin-dependent kinase 22.7.11.220.447
3tnwF18Cyclin-dependent kinase 22.7.11.220.447
4anuEM7Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.447
4jx1CAMCamphor 5-monooxygenase1.14.15.10.447
4l4fCAMCamphor 5-monooxygenase1.14.15.10.447
1d4yTPVGag-Pol polyprotein3.4.23.160.446
1ec3MS3Gag-Pol polyprotein3.4.23.160.446
1g5sI17Cyclin-dependent kinase 22.7.11.220.446
1oiqHDUCyclin-dependent kinase 22.7.11.220.446
2npaMMBPeroxisome proliferator-activated receptor alpha/0.446
2xckMH43-phosphoinositide-dependent protein kinase 12.7.11.10.446
3ddpRC8Cyclin-dependent kinase 22.7.11.220.446
3dzvADPHydroxyethylthiazole kinase/0.446
3nwxKVSGag-Pol polyprotein3.4.23.160.446
3qtxX43Cyclin-dependent kinase 22.7.11.220.446
3qx4X4BCyclin-dependent kinase 22.7.11.220.446
3r8pZ46Cyclin-dependent kinase 22.7.11.220.446
3sw1FMNSensory box protein/0.446
3unj0BXCyclin-dependent kinase 22.7.11.220.446
4asg814ATP-dependent molecular chaperone HSP82/0.446
1e8wQUEPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
1ykr628Cyclin-dependent kinase 22.7.11.220.445
2a0cCK9Cyclin-dependent kinase 22.7.11.220.445
2ayp43ASerine/threonine-protein kinase Chk12.7.11.10.445
2c6iDT1Cyclin-dependent kinase 22.7.11.220.445
2duv371Cyclin-dependent kinase 22.7.11.220.445
2i0aMUIProtease/0.445
2igyA2TPlasmepsin 2/0.445
2psuMUUProtease/0.445
3ezrEZRCyclin-dependent kinase 22.7.11.220.445
3roy22ZCyclin-dependent kinase 22.7.11.220.445
3zpuM8BGag-Pol polyprotein3.4.23.160.445
4a6bQG8Gag-Pol polyprotein3.4.23.160.445
4as76LXKinesin-like protein KIF11/0.445
4fkg4CKCyclin-dependent kinase 22.7.11.220.445
4gih0X5Non-receptor tyrosine-protein kinase TYK22.7.10.20.445
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
4z34ON7Lysophosphatidic acid receptor 1/0.445
1v0oINRCell division control protein 2 homolog2.7.11.220.444
2ien017Gag-Pol polyprotein3.4.23.160.444
3eb0DRKUncharacterized protein/0.444
3nduROCGag-Pol polyprotein3.4.23.160.444
3ti1B49Cyclin-dependent kinase 22.7.11.220.444
4bcmT7ZCyclin-dependent kinase 22.7.11.220.444
4gb90WRPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
4ivb1J5Tyrosine-protein kinase JAK1/0.444
1aylATPPhosphoenolpyruvate carboxykinase (ATP)/0.443
2brmDFZSerine/threonine-protein kinase Chk12.7.11.10.443
2brnDF1Serine/threonine-protein kinase Chk12.7.11.10.443
2iw6QQ2Cyclin-dependent kinase 22.7.11.220.443
2r3p3SCCyclin-dependent kinase 22.7.11.220.443
2vtlLZ5Cyclin-dependent kinase 22.7.11.220.443
3anmNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase1.1.1.2670.443
3eem53VUncharacterized protein/0.443
3ig7EFPCyclin-dependent kinase 22.7.11.220.443
3inxJZCHeat shock protein HSP 90-alpha/0.443
3l63CAMCamphor 5-monooxygenase1.14.15.10.443
3nd1SAHPrecorrin-6A synthase (Deacetylating)/0.443
3oy4017Gag-Pol polyprotein3.4.23.160.443
3qqfX07Cyclin-dependent kinase 22.7.11.220.443
3vspEK8Peroxisome proliferator-activated receptor gamma/0.443
4bcpT3CCyclin-dependent kinase 22.7.11.220.443
4brxKGWFocal adhesion kinase 12.7.10.20.443
4jx1CAHCamphor 5-monooxygenase1.14.15.10.443
4r21STRCytochrome P450 family 17 polypeptide 2/0.443
1ckpPVBCyclin-dependent kinase 22.7.11.220.442
1dm2HMDCyclin-dependent kinase 22.7.11.220.442
1hbvGANGag-Pol polyprotein/0.442
1kvkATPMevalonate kinase2.7.1.360.442
1n07FMNRiboflavin kinase2.7.1.260.442
1oitHDTCyclin-dependent kinase 22.7.11.220.442
2b00GCHPhospholipase A2, major isoenzyme3.1.1.40.442
2q5kAB1Protease/0.442
2z97CAMCamphor 5-monooxygenase1.14.15.10.442
3dogNNNCyclin-dependent kinase 22.7.11.220.442
3e2sFADBifunctional protein PutA1.5.5.20.442
4dqc017Gag-Pol polyprotein/0.442
4fsyHK7Serine/threonine-protein kinase Chk12.7.11.10.442
4fv9E71Mitogen-activated protein kinase 12.7.11.240.442
4fx360KCyclin-dependent kinase 22.7.11.220.442
4l3l5FIRibosomal protein S6 kinase beta-12.7.11.10.442
4otwDB8Receptor tyrosine-protein kinase erbB-32.7.10.10.442
1d7yFADFerredoxin reductase/0.441
1hfqMOTDihydrofolate reductase1.5.1.30.441
1meuDMPGag-Pol polyprotein3.4.23.160.441
1ohr1UNV-1 PROTEASE protein/0.441
1phkATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform2.7.11.190.441
1pxmCK5Cyclin-dependent kinase 22.7.11.220.441
1z1rHBHGag-Pol polyprotein3.4.23.160.441
1zeoC01Peroxisome proliferator-activated receptor gamma/0.441
2fdd385Pol protein/0.441
2psvMUVProtease/0.441
2vuw5IDSerine/threonine-protein kinase haspin2.7.11.10.441
2yexYEXSerine/threonine-protein kinase Chk12.7.11.10.441
3cd57HI3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.340.441
3cktYDPGag-Pol polyprotein3.4.23.160.441
3mxeK54Gag-Pol polyprotein3.4.23.160.441
3nmpPYVAbscisic acid receptor PYL2/0.441
3qqhX0ACyclin-dependent kinase 22.7.11.220.441
3rk909ZCyclin-dependent kinase 22.7.11.220.441
4h3ySAHtRNA (guanine-N(1)-)-methyltransferase/0.441
5c8wPCGcGMP-dependent protein kinase 22.7.11.120.441
5iubCLRAdenosine receptor A2a/0.441
1h0w207Cyclin-dependent kinase 22.7.11.220.440
1h1s4SPCyclin-dependent kinase 22.7.11.220.440
2avsMK1Gag-Pol polyprotein3.4.23.160.440
2b52D42Cyclin-dependent kinase 22.7.11.220.440
2c6o4SPCyclin-dependent kinase 22.7.11.220.440
2f2uM77Rho-associated protein kinase 22.7.11.10.440
2i40BLZCyclin-dependent kinase 22.7.11.220.440
2rkfAB1Pol protein/0.440
2uxiG50HTH-type transcriptional regulator TtgR/0.440
2uzoC62Cyclin-dependent kinase 22.7.11.220.440
2vwqNAPGlucose 1-dehydrogenase/0.440
2xvv9DNSerum albumin/0.440
3p3zP3ZPutative cytochrome P450/0.440
3qroNK9Gag-Pol polyprotein3.4.23.160.440
3qxoX65Cyclin-dependent kinase 22.7.11.220.440
4ftu7HKSerine/threonine-protein kinase Chk12.7.11.10.440
4lgaA2OAbscisic acid receptor PYL2/0.440