sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
2.310 Å
X-ray
2012-08-08
| Min | Mean | Median | Standard Deviation | Max | Count | |
|---|---|---|---|---|---|---|
| pChEMBL: | 8.750 | 8.750 | 8.750 | 0.000 | 8.750 | 1 |
| Name: | Non-receptor tyrosine-protein kinase TYK2 |
|---|---|
| ID: | TYK2_HUMAN |
| AC: | P29597 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.10.2 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 50.689 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.251 | 465.750 |
| % Hydrophobic | % Polar |
|---|---|
| 55.07 | 44.93 |
| According to VolSite | |
| HET Code: | 0X6 |
|---|---|
| Formula: | C17H12Cl2N4O2 |
| Molecular weight: | 375.209 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 62.79 % |
| Polar Surface area: | 94.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| -7.6066 | -8.01644 | -16.8707 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5 | CD1 | LEU- 903 | 4.27 | 0 | Hydrophobic |
| CL1 | CB | LEU- 903 | 4.05 | 0 | Hydrophobic |
| C25 | CD2 | LEU- 903 | 4.11 | 0 | Hydrophobic |
| C1 | CG1 | VAL- 911 | 4.41 | 0 | Hydrophobic |
| CL1 | CB | VAL- 911 | 3.5 | 0 | Hydrophobic |
| C15 | CG2 | VAL- 911 | 4.14 | 0 | Hydrophobic |
| C1 | CB | ALA- 928 | 4.14 | 0 | Hydrophobic |
| C1 | CD1 | ILE- 960 | 4.13 | 0 | Hydrophobic |
| C23 | CE1 | TYR- 980 | 3.7 | 0 | Hydrophobic |
| N3 | N | VAL- 981 | 3.18 | 151.26 | H-Bond (Protein Donor) |
| N20 | O | VAL- 981 | 2.71 | 160.53 | H-Bond (Ligand Donor) |
| C5 | CD2 | LEU- 1030 | 3.68 | 0 | Hydrophobic |
| C1 | CD1 | LEU- 1030 | 3.74 | 0 | Hydrophobic |
| CL2 | CD1 | LEU- 1030 | 4.06 | 0 | Hydrophobic |
| CL2 | CB | ASP- 1041 | 4.12 | 0 | Hydrophobic |
