1.750 Å
X-ray
2011-03-02
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 24.657 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.568 | 1923.750 |
% Hydrophobic | % Polar |
---|---|
42.11 | 57.89 |
According to VolSite |
HET Code: | X64 |
---|---|
Formula: | C16H13N5O5S2 |
Molecular weight: | 419.435 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 63.73 % |
Polar Surface area: | 210.6 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-65.8684 | 80.7691 | 83.9735 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C09 | CD1 | ILE- 10 | 4.09 | 0 | Hydrophobic |
S27 | CD1 | ILE- 10 | 3.99 | 0 | Hydrophobic |
C13 | CG2 | VAL- 18 | 3.66 | 0 | Hydrophobic |
S27 | CB | ALA- 31 | 4.37 | 0 | Hydrophobic |
N03 | O | GLU- 81 | 2.88 | 147.62 | H-Bond (Ligand Donor) |
N01 | N | LEU- 83 | 3.43 | 170.97 | H-Bond (Protein Donor) |
C18 | CB | ASP- 86 | 3.96 | 0 | Hydrophobic |
O23 | N | ASP- 86 | 3.04 | 159.9 | H-Bond (Protein Donor) |
O24 | NZ | LYS- 89 | 3.25 | 134.4 | H-Bond (Protein Donor) |
C16 | CD2 | LEU- 134 | 4.28 | 0 | Hydrophobic |
C17 | CD2 | LEU- 134 | 4.1 | 0 | Hydrophobic |
S27 | CD1 | LEU- 134 | 4.1 | 0 | Hydrophobic |
C16 | CB | ALA- 144 | 3.83 | 0 | Hydrophobic |
C14 | CB | ASP- 145 | 3.56 | 0 | Hydrophobic |