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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2z97

1.800 Å

X-ray

2007-09-18

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Camphor 5-monooxygenase
ID:CPXA_PSEPU
AC:P00183
Organism:Pseudomonas putida
Reign:Bacteria
TaxID:303
EC Number:1.14.15.1


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:15.306
Number of residues:20
Including
Standard Amino Acids: 19
Non Standard Amino Acids: 1
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.817850.500

% Hydrophobic% Polar
65.8734.13
According to VolSite

Ligand :
2z97_1 Structure
HET Code: CAM
Formula: C10H16O
Molecular weight: 152.233 g/mol
DrugBank ID: DB01744
Buried Surface Area:56.05 %
Polar Surface area: 17.07 Å2
Number of
H-Bond Acceptors: 1
H-Bond Donors: 0
Rings: 2
Aromatic rings: 0
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 0

Mass center Coordinates

XYZ
-15.0473-9.797187.30373


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C8CZPHE- 874.250Hydrophobic
OOHTYR- 962.85141.99H-Bond
(Protein Donor)
C3CG2THR- 1013.640Hydrophobic
C10CG2THR- 1854.350Hydrophobic
C3CGLEU- 2444.270Hydrophobic
C5CD1LEU- 2443.530Hydrophobic
C6CG1VAL- 2473.450Hydrophobic
C6CG2THR- 2524.140Hydrophobic
C9CG2THR- 2524.020Hydrophobic
C8CG1VAL- 2953.990Hydrophobic
C9CG2VAL- 2953.880Hydrophobic
C10CG2ILE- 3954.50Hydrophobic
C10CG2VAL- 3963.90Hydrophobic