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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2z97 CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.854
2zaw CAMCamphor 5-monooxygenase 1.14.15.1 0.748
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5l DBHPolymerase acidic protein / 0.744
5cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.742
4l49 CAMCamphor 5-monooxygenase 1.14.15.1 0.737
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.725
1yrd CAMCamphor 5-monooxygenase 1.14.15.1 0.722
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.719
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.705
4cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.699
2cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.694
1noo CAHCamphor 5-monooxygenase 1.14.15.1 0.689
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.689
2zui CAMCamphor 5-monooxygenase 1.14.15.1 0.689
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.686
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.686
1geb CAMCamphor 5-monooxygenase 1.14.15.1 0.680
4l4c CAMCamphor 5-monooxygenase 1.14.15.1 0.680
4c9o CAMCytochrome P450 / 0.678
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.673
3wrl CAMCamphor 5-monooxygenase 1.14.15.1 0.673
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.671
1t88 CAMCamphor 5-monooxygenase 1.14.15.1 0.670
2qbl CAMCamphor 5-monooxygenase 1.14.15.1 0.666
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.666
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.666
4kky CAMCamphor 5-monooxygenase 1.14.15.1 0.664
1iwj CAMCamphor 5-monooxygenase 1.14.15.1 0.663
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3fwf CAMCamphor 5-monooxygenase 1.14.15.1 0.659
3wrh CAMCamphor 5-monooxygenase 1.14.15.1 0.654
1dz6 CAMCamphor 5-monooxygenase 1.14.15.1 0.653
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.653
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.653
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.653
1phg MYTCamphor 5-monooxygenase 1.14.15.1 0.651
1yrc CAMCamphor 5-monooxygenase 1.14.15.1 0.651
3wrm CAMCamphor 5-monooxygenase 1.14.15.1 0.651