1.750 Å
X-ray
2011-03-22
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 28.021 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.810 | 590.625 |
% Hydrophobic | % Polar |
---|---|
44.00 | 56.00 |
According to VolSite |
HET Code: | X84 |
---|---|
Formula: | C16H19N5O4 |
Molecular weight: | 345.353 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 50.3 % |
Polar Surface area: | 146.08 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 4 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 9 |
X | Y | Z |
---|---|---|
-65.4269 | -9.77976 | 25.7034 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C07 | CD1 | ILE- 10 | 4.42 | 0 | Hydrophobic |
C09 | CG2 | ILE- 10 | 3.56 | 0 | Hydrophobic |
C18 | CG2 | ILE- 10 | 4.18 | 0 | Hydrophobic |
C20 | CG2 | ILE- 10 | 4.09 | 0 | Hydrophobic |
C06 | CG1 | VAL- 18 | 4.28 | 0 | Hydrophobic |
C06 | CB | ALA- 31 | 3.78 | 0 | Hydrophobic |
N02 | O | GLU- 81 | 2.94 | 168.37 | H-Bond (Ligand Donor) |
N01 | O | LEU- 83 | 2.92 | 130.36 | H-Bond (Ligand Donor) |
O22 | N | LEU- 83 | 2.91 | 172.32 | H-Bond (Protein Donor) |
C09 | CD2 | LEU- 134 | 4.21 | 0 | Hydrophobic |
C13 | CD2 | LEU- 134 | 3.86 | 0 | Hydrophobic |
C07 | CD1 | LEU- 134 | 3.59 | 0 | Hydrophobic |