1.750 Å
X-ray
2011-03-22
| Name: | Cyclin-dependent kinase 2 |
|---|---|
| ID: | CDK2_HUMAN |
| AC: | P24941 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.22 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 28.021 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.810 | 590.625 |
| % Hydrophobic | % Polar |
|---|---|
| 44.00 | 56.00 |
| According to VolSite | |

| HET Code: | X84 |
|---|---|
| Formula: | C16H19N5O4 |
| Molecular weight: | 345.353 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 50.3 % |
| Polar Surface area: | 146.08 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 4 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 9 |
| X | Y | Z |
|---|---|---|
| -65.4269 | -9.77976 | 25.7034 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C07 | CD1 | ILE- 10 | 4.42 | 0 | Hydrophobic |
| C09 | CG2 | ILE- 10 | 3.56 | 0 | Hydrophobic |
| C18 | CG2 | ILE- 10 | 4.18 | 0 | Hydrophobic |
| C20 | CG2 | ILE- 10 | 4.09 | 0 | Hydrophobic |
| C06 | CG1 | VAL- 18 | 4.28 | 0 | Hydrophobic |
| C06 | CB | ALA- 31 | 3.78 | 0 | Hydrophobic |
| N02 | O | GLU- 81 | 2.94 | 168.37 | H-Bond (Ligand Donor) |
| N01 | O | LEU- 83 | 2.92 | 130.36 | H-Bond (Ligand Donor) |
| O22 | N | LEU- 83 | 2.91 | 172.32 | H-Bond (Protein Donor) |
| C09 | CD2 | LEU- 134 | 4.21 | 0 | Hydrophobic |
| C13 | CD2 | LEU- 134 | 3.86 | 0 | Hydrophobic |
| C07 | CD1 | LEU- 134 | 3.59 | 0 | Hydrophobic |