2.000 Å
X-ray
2008-05-15
| Name: | Cyclin-dependent kinase 2 |
|---|---|
| ID: | CDK2_HUMAN |
| AC: | P24941 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.22 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 28.721 |
|---|---|
| Number of residues: | 21 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.555 | 435.375 |
| % Hydrophobic | % Polar |
|---|---|
| 45.74 | 54.26 |
| According to VolSite | |

| HET Code: | LZ5 |
|---|---|
| Formula: | C10H9N3O |
| Molecular weight: | 187.198 g/mol |
| DrugBank ID: | DB08135 |
| Buried Surface Area: | 66.82 % |
| Polar Surface area: | 57.78 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 29.3531 | 6.62057 | 65.0869 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C9 | CG2 | ILE- 10 | 3.96 | 0 | Hydrophobic |
| N3 | O | LEU- 83 | 2.73 | 128.36 | H-Bond (Ligand Donor) |
| N15 | N | LEU- 83 | 3.02 | 170.82 | H-Bond (Protein Donor) |
| C6 | CB | ASP- 86 | 4.36 | 0 | Hydrophobic |
| C5 | CD2 | LEU- 134 | 4.1 | 0 | Hydrophobic |