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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vtl LZ5 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vtl LZ5Cyclin-dependent kinase 2 2.7.11.22 0.792
4e5i 0N9Polymerase acidic protein / 0.744
2c6k DT2Cyclin-dependent kinase 2 2.7.11.22 0.710
2vtn LZ7Cyclin-dependent kinase 2 2.7.11.22 0.708
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.705
4ez3 0S0Cyclin-dependent kinase 2 2.7.11.22 0.699
2c6t DT5Cyclin-dependent kinase 2 2.7.11.22 0.698
3wbl PDYCyclin-dependent kinase 2 2.7.11.22 0.696
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.695
2vtp LZ9Cyclin-dependent kinase 2 2.7.11.22 0.692
2vto LZ8Cyclin-dependent kinase 2 2.7.11.22 0.664
4e5f 0N7Polymerase acidic protein / 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.658
2opn SUFFarnesyl pyrophosphate synthase 2.5.1.10 0.657
2vtq LZACyclin-dependent kinase 2 2.7.11.22 0.657
1vhz APRADP compounds hydrolase NudE 3.6.1 0.655
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.653