2.940 Å
X-ray
2012-03-14
Name: | Polymerase acidic protein |
---|---|
ID: | Q5EP34_9INFA |
AC: | Q5EP34 |
Organism: | Influenza A virus ) |
Reign: | Viruses |
TaxID: | 284218 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 81.646 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 17 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.674 | 1218.375 |
% Hydrophobic | % Polar |
---|---|
32.69 | 67.31 |
According to VolSite |
HET Code: | 0N9 |
---|---|
Formula: | C9H6N4O4 |
Molecular weight: | 234.168 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 30.71 % |
Polar Surface area: | 122.47 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-4.22035 | -16.576 | 18.7431 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N6 | NZ | LYS- 134 | 3.23 | 122.55 | H-Bond (Protein Donor) |
O13 | MN | MN- 303 | 2.49 | 0 | Metal Acceptor |
O12 | MN | MN- 303 | 2.26 | 0 | Metal Acceptor |
O15 | MN | MN- 304 | 2.41 | 0 | Metal Acceptor |
O13 | MN | MN- 304 | 2.1 | 0 | Metal Acceptor |