2.300 Å
X-ray
2007-04-30
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 27.903 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.907 | 600.750 |
% Hydrophobic | % Polar |
---|---|
48.88 | 51.12 |
According to VolSite |
HET Code: | C62 |
---|---|
Formula: | C14H9N2O5S2 |
Molecular weight: | 349.362 g/mol |
DrugBank ID: | DB07531 |
Buried Surface Area: | 62.06 % |
Polar Surface area: | 155.22 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
11.4066 | -9.02748 | 10.9124 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C13 | CG2 | ILE- 10 | 3.32 | 0 | Hydrophobic |
O3 | N | ASP- 86 | 3.1 | 156.14 | H-Bond (Protein Donor) |
N6 | OD2 | ASP- 86 | 3.47 | 159.48 | H-Bond (Ligand Donor) |
C15 | CB | ASP- 86 | 3.97 | 0 | Hydrophobic |
S1 | CD1 | LEU- 134 | 4.36 | 0 | Hydrophobic |
C14 | CD2 | LEU- 134 | 3.82 | 0 | Hydrophobic |
S1 | CB | ALA- 144 | 4.27 | 0 | Hydrophobic |
N2 | OD2 | ASP- 145 | 2.62 | 140.92 | H-Bond (Ligand Donor) |