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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2uzo C62 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2uzo C62Cyclin-dependent kinase 2 2.7.11.22 0.829
4e5i 0N9Polymerase acidic protein / 0.744
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.683
1urw I1PCyclin-dependent kinase 2 2.7.11.22 0.670
2c6o 4SPCyclin-dependent kinase 2 2.7.11.22 0.669
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.665
4e5f 0N7Polymerase acidic protein / 0.660
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.658
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.657