1.630 Å
X-ray
2011-12-16
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 34.813 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.178 | 556.875 |
% Hydrophobic | % Polar |
---|---|
55.76 | 44.24 |
According to VolSite |
HET Code: | 7YG |
---|---|
Formula: | C20H24N7O3S |
Molecular weight: | 442.515 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 54.89 % |
Polar Surface area: | 152.77 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
2.22135 | 27.8982 | 8.61348 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CB | ILE- 10 | 4.22 | 0 | Hydrophobic |
C13 | CD1 | ILE- 10 | 3.85 | 0 | Hydrophobic |
C26 | CG2 | VAL- 18 | 4.42 | 0 | Hydrophobic |
N31 | O | GLU- 81 | 2.79 | 170.02 | H-Bond (Ligand Donor) |
N18 | N | LEU- 83 | 2.95 | 172.81 | H-Bond (Protein Donor) |
O9 | N | ASP- 86 | 3.13 | 168.22 | H-Bond (Protein Donor) |
C11 | CB | ASP- 86 | 3.78 | 0 | Hydrophobic |
O8 | NZ | LYS- 89 | 3.42 | 130.73 | H-Bond (Protein Donor) |
C27 | CB | ASN- 132 | 4.13 | 0 | Hydrophobic |
C12 | CD2 | LEU- 134 | 3.89 | 0 | Hydrophobic |