sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
2.900 Å
X-ray
2013-06-07
| Name: | Ribosomal protein S6 kinase beta-1 |
|---|---|
| ID: | KS6B1_HUMAN |
| AC: | P23443 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 31.003 |
|---|---|
| Number of residues: | 35 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.008 | 567.000 |
| % Hydrophobic | % Polar |
|---|---|
| 48.81 | 51.19 |
| According to VolSite | |
| HET Code: | 5FI |
|---|---|
| Formula: | C19H22F3N6 |
| Molecular weight: | 391.413 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 69.81 % |
| Polar Surface area: | 62.14 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 4 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| -47.525 | 15.3656 | 8.51621 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAN | CB | LEU- 74 | 4.1 | 0 | Hydrophobic |
| FAC | CB | TYR- 79 | 3.81 | 0 | Hydrophobic |
| CAN | CG1 | VAL- 82 | 3.77 | 0 | Hydrophobic |
| CAA | CG1 | VAL- 82 | 3.8 | 0 | Hydrophobic |
| CAF | CG2 | VAL- 82 | 3.78 | 0 | Hydrophobic |
| CAA | CB | ALA- 98 | 3.64 | 0 | Hydrophobic |
| FAD | CD1 | LEU- 102 | 3.31 | 0 | Hydrophobic |
| CAJ | CG2 | VAL- 133 | 4.43 | 0 | Hydrophobic |
| CAA | CD1 | LEU- 149 | 3.77 | 0 | Hydrophobic |
| N1 | N | LEU- 152 | 2.93 | 169.5 | H-Bond (Protein Donor) |
| CAM | CG | MET- 202 | 4.32 | 0 | Hydrophobic |
| CAM | CB | THR- 212 | 4.18 | 0 | Hydrophobic |
| NAR | OD1 | ASP- 213 | 3.08 | 168.8 | H-Bond (Ligand Donor) |
| NAR | OD2 | ASP- 213 | 3.29 | 133.35 | H-Bond (Ligand Donor) |
| FAD | CG | LEU- 216 | 4.25 | 0 | Hydrophobic |
| CAF | CB | LYS- 218 | 4.39 | 0 | Hydrophobic |
| CAX | CB | LYS- 218 | 3.46 | 0 | Hydrophobic |
