1.920 Å
X-ray
2011-03-01
Name: | Cyclin-dependent kinase 2 |
---|---|
ID: | CDK2_HUMAN |
AC: | P24941 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 30.997 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.741 | 492.750 |
% Hydrophobic | % Polar |
---|---|
48.63 | 51.37 |
According to VolSite |
HET Code: | X4B |
---|---|
Formula: | C13H11ClN4O3 |
Molecular weight: | 306.704 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 57.43 % |
Polar Surface area: | 113.82 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
38.6741 | 81.6117 | -46.9699 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C13 | CG2 | ILE- 10 | 4.02 | 0 | Hydrophobic |
C16 | CG1 | ILE- 10 | 4.18 | 0 | Hydrophobic |
C17 | CD1 | ILE- 10 | 4.11 | 0 | Hydrophobic |
CL21 | CG2 | ILE- 10 | 3.62 | 0 | Hydrophobic |
C07 | CD1 | ILE- 10 | 4.14 | 0 | Hydrophobic |
C08 | CG2 | ILE- 10 | 3.46 | 0 | Hydrophobic |
C05 | CG1 | VAL- 18 | 4.22 | 0 | Hydrophobic |
C09 | CG1 | VAL- 18 | 3.97 | 0 | Hydrophobic |
CL21 | CG2 | VAL- 18 | 4 | 0 | Hydrophobic |
C05 | CB | ALA- 31 | 3.54 | 0 | Hydrophobic |
N01 | O | GLU- 81 | 2.93 | 160.07 | H-Bond (Ligand Donor) |
N02 | O | LEU- 83 | 2.95 | 130.02 | H-Bond (Ligand Donor) |
O18 | N | LEU- 83 | 2.91 | 168.14 | H-Bond (Protein Donor) |
C12 | CD2 | LEU- 134 | 3.88 | 0 | Hydrophobic |
C06 | CD1 | LEU- 134 | 3.61 | 0 | Hydrophobic |