sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4nyj | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4nyj | GNP | GTPase HRas | / | 1.213 | |
| 4nyi | GNP | GTPase HRas | / | 1.164 | |
| 4g0n | GNP | GTPase HRas | / | 1.155 | |
| 3i3s | GNP | GTPase HRas | / | 1.150 | |
| 3k8y | GNP | GTPase HRas | / | 1.149 | |
| 3rs4 | GNP | GTPase HRas | / | 1.148 | |
| 3rs5 | GNP | GTPase HRas | / | 1.148 | |
| 3rs7 | GNP | GTPase HRas | / | 1.148 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.145 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.145 | |
| 2rgc | GNP | GTPase HRas | / | 1.144 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.142 | |
| 4dlx | GNP | GTPase HRas | / | 1.132 | |
| 4dlz | GNP | GTPase HRas | / | 1.132 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.131 | |
| 4dlv | GNP | GTPase HRas | / | 1.131 | |
| 3rs0 | GNP | GTPase HRas | / | 1.130 | |
| 4dlt | GNP | GTPase HRas | / | 1.130 | |
| 3oiw | GNP | GTPase HRas | / | 1.129 | |
| 4dlw | GNP | GTPase HRas | / | 1.129 | |
| 3rsl | GNP | GTPase HRas | / | 1.128 | |
| 3oiv | GNP | GTPase HRas | / | 1.125 | |
| 3lbi | GNP | GTPase HRas | / | 1.117 | |
| 3v4f | GNP | GTPase HRas | / | 1.116 | |
| 4l9w | GNP | GTPase HRas | / | 1.115 | |
| 3lbn | GNP | GTPase HRas | / | 1.114 | |
| 5b2z | GNP | GTPase HRas | / | 1.114 | |
| 3oiu | GNP | GTPase HRas | / | 1.112 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.108 | |
| 2c5l | GTP | GTPase HRas | / | 1.107 | |
| 2rge | GNP | GTPase HRas | / | 1.101 | |
| 4dls | GNP | GTPase HRas | / | 1.098 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.093 | |
| 3k9l | GNP | GTPase HRas | / | 1.089 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.087 | |
| 3l8y | GNP | GTPase HRas | / | 1.085 | |
| 2rgb | GNP | GTPase HRas | / | 1.079 | |
| 4k81 | GTP | GTPase HRas | / | 1.077 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.071 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.071 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.070 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.067 | |
| 4dso | GSP | GTPase KRas | / | 1.056 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.054 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.053 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.049 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 1.048 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.045 | |
| 2rgg | GNP | GTPase HRas | / | 1.035 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.035 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.034 | |
| 3tgp | GNP | GTPase HRas | / | 1.028 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.026 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.025 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.024 | |
| 4dsn | GCP | GTPase KRas | / | 1.018 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.018 | |
| 4mit | GTP | Rho-related protein racC | / | 1.016 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.011 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.010 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.005 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.003 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.002 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 1.002 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.000 | |
| 4xvq | GNP | GTPase HRas | / | 0.997 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.994 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.991 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.988 | |
| 3kud | GDP | GTPase HRas | / | 0.983 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.976 | |
| 3lbh | GNP | GTPase HRas | / | 0.975 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.975 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.974 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.974 | |
| 3ddc | GNP | GTPase HRas | / | 0.972 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.970 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.968 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.967 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.967 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.960 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.958 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.957 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.957 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.956 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.949 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.948 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.947 | |
| 4ql3 | GDP | GTPase KRas | / | 0.947 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.944 | |
| 4dsu | GDP | GTPase KRas | / | 0.943 | |
| 4l9s | GDP | GTPase HRas | / | 0.939 | |
| 2ce2 | GDP | GTPase HRas | / | 0.938 | |
| 1lfd | GNP | GTPase HRas | / | 0.936 | |
| 4wa7 | GDP | GTPase KRas | / | 0.934 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.931 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.931 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.930 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.928 | |
| 4q02 | GDP | GTPase KRas | / | 0.928 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.924 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.923 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.920 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.919 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.919 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.917 | |
| 4q03 | GDP | GTPase KRas | / | 0.916 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.915 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.915 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.915 | |
| 4epw | GDP | GTPase KRas | / | 0.914 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.913 | |
| 4dvg | GSP | Rho family GTPase | / | 0.913 | |
| 4tq9 | GDP | GTPase KRas | / | 0.912 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.910 | |
| 4epx | GDP | GTPase KRas | / | 0.909 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.908 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.908 | |
| 4lv6 | GDP | GTPase KRas | / | 0.907 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.906 | |
| 4l8g | GDP | GTPase KRas | / | 0.905 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.903 | |
| 4xvr | GNP | GTPase HRas | / | 0.902 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.900 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.900 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.897 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.897 | |
| 4lpk | GDP | GTPase KRas | / | 0.896 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.895 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.894 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.893 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.893 | |
| 2cl6 | CAG | GTPase HRas | / | 0.890 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.885 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.885 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.881 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.880 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.878 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.876 | |
| 3ref | GDP | Rho family GTPase | / | 0.874 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.873 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.872 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.871 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.865 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.862 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.861 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.860 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.860 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.858 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.858 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.856 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.854 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.853 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.853 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.851 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.851 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.850 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.849 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.848 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.848 | |
| 4db1 | ANP | Myosin-7 | / | 0.848 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.847 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.842 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.841 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.838 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.838 | |
| 4lrw | GDP | GTPase KRas | / | 0.835 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.834 | |
| 3r9x | GNP | GTPase Era | / | 0.833 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.832 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.832 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.831 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.829 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.829 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.828 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.827 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.826 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.825 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.824 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.819 | |
| 4luc | GDP | GTPase KRas | / | 0.818 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.816 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.815 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.814 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.811 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.810 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.810 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.809 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.807 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.806 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.804 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.800 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.799 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.799 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.799 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.796 | |
| 3ftq | GNP | Septin-2 | / | 0.795 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.795 | |
| 5bn3 | ADP | NEQ263 | / | 0.795 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.793 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.793 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.792 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.791 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.788 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.786 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.785 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.785 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.784 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.784 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.784 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.783 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.783 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.782 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.782 | |
| 4ldj | GDP | GTPase KRas | / | 0.781 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.779 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.779 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.779 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.778 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.777 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.776 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.775 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.774 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.773 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.769 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.768 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.767 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.767 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.765 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.764 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.764 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.761 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.761 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.760 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.760 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.759 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.758 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.758 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.758 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.757 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.757 | |
| 2fna | ADP | Uncharacterized protein | / | 0.756 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.755 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.754 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.753 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.753 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.753 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.753 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.752 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.752 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.752 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.752 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.751 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.751 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.749 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.749 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.748 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.746 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.746 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.745 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.745 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.744 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.744 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.743 | |
| 1ank | ANP | Adenylate kinase | / | 0.742 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.741 | |
| 5cyo | GDP | Septin-9 | / | 0.741 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.739 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.739 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.739 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.739 | |
| 4yqf | GDP | Septin-9 | / | 0.739 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.738 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.738 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.737 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.737 | |
| 4v02 | ATP | Site-determining protein | / | 0.737 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.736 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.736 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.736 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.733 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.733 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.732 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.732 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.732 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.732 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.732 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.730 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.730 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.730 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.729 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.728 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.727 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.727 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.727 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.726 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.725 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.724 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.724 | |
| 4c2u | ANP | DNA helicase | / | 0.724 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.722 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.721 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.720 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.720 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.720 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.719 | |
| 1xms | ANP | Protein RecA | / | 0.719 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.719 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.718 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.717 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.717 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.716 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.716 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.715 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.715 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.715 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.714 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.714 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.713 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.712 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.711 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.711 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.709 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.709 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.709 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.708 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.708 | |
| 2zts | ADP | Uncharacterized protein | / | 0.708 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.708 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.706 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.706 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.706 | |
| 4xvu | ATP | ATPase GET3 | / | 0.706 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.705 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.705 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.704 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.703 | |
| 1nly | AGS | Cag alpha | / | 0.702 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.702 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.701 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.700 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.699 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.699 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.698 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.697 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.696 | |
| 4jlo | ADP | Adenylate kinase | / | 0.695 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.694 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.694 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.694 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.693 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.692 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.690 | |
| 4jld | ADP | Adenylate kinase | / | 0.690 | |
| 1dvr | ATF | Adenylate kinase | / | 0.689 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.689 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.689 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.689 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.688 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.688 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.687 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.686 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.685 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.684 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.682 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.682 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.680 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.680 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.678 | |
| 4ihj | GTP | Tubulin alpha-1B chain | / | 0.677 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.676 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.675 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.675 | |
| 2ad5 | ADP | CTP synthase | / | 0.675 | |
| 5dac | AGS | Uncharacterized protein | / | 0.675 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.674 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.672 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.672 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.672 | |
| 5la6 | GTP | Tubulin alpha-1B chain | / | 0.672 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.671 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.670 | |
| 4c30 | ANP | DNA helicase | / | 0.669 | |
| 4qbg | AP5 | Adenylate kinase | / | 0.669 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.668 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.668 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.668 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.668 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.667 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.665 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.665 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.664 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.661 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.661 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.660 | |
| 3qi2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.660 | |
| 1ake | AP5 | Adenylate kinase | / | 0.659 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.659 | |
| 2q9c | GNP | Signal recognition particle receptor FtsY | / | 0.659 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.659 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.658 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.658 | |
| 4jky | ADP | Adenylate kinase | / | 0.658 | |
| 1g6o | ADP | Cag alpha | / | 0.657 | |
| 2jcs | TTP | Deoxynucleoside kinase | / | 0.656 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.656 | |
| 2vp2 | DGT | Deoxynucleoside kinase | / | 0.655 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.655 | |
| 4df4 | 0L3 | DNA polymerase I, thermostable | 2.7.7.7 | 0.655 | |
| 1kqm | ANP | Myosin heavy chain, striated muscle | / | 0.654 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.654 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.653 | |
| 2eck | ADP | Adenylate kinase | / | 0.652 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.651 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.651 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.650 |