Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4g6h | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
4g6h | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 1.244 | |
4g6g | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 1.112 | |
4g9k | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 1.108 | |
4g73 | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 1.097 | |
4gap | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 1.070 | |
4g74 | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 1.065 | |
4gav | FAD | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial | 1.6.5.9 | 0.927 | |
3grs | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.857 | |
3icr | FAD | Coenzyme A disulfide reductase | / | 0.833 | |
4hb9 | FAD | Uncharacterized protein | / | 0.822 | |
2r9z | FAD | Glutathione amide reductase | / | 0.815 | |
1bwc | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.811 | |
1f8w | FAD | NADH peroxidase | 1.11.1.1 | 0.808 | |
1trb | FAD | Thioredoxin reductase | 1.8.1.9 | 0.808 | |
1gsn | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.807 | |
4emj | FAD | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component | 1.18.1.3 | 0.800 | |
2q7v | FAD | Thioredoxin reductase | / | 0.799 | |
1tdf | FAD | Thioredoxin reductase | 1.8.1.9 | 0.796 | |
1tde | FAD | Thioredoxin reductase | 1.8.1.9 | 0.795 | |
1ges | FAD | Glutathione reductase | 1.8.1.7 | 0.792 | |
4kpr | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.791 | |
3ict | FAD | Coenzyme A disulfide reductase | / | 0.790 | |
4em3 | FAD | Coenzyme A disulfide reductase | / | 0.785 | |
1nhr | FAD | NADH peroxidase | 1.11.1.1 | 0.782 | |
2x8h | FAD | Thioredoxin glutathione reductase | / | 0.782 | |
3ics | FAD | Coenzyme A disulfide reductase | / | 0.781 | |
2x8g | FAD | Thioredoxin glutathione reductase | / | 0.778 | |
3dh9 | FAD | Thioredoxin reductase 1, mitochondrial | 1.8.1.9 | 0.777 | |
4gcm | FAD | Thioredoxin reductase | 1.8.1.9 | 0.777 | |
2wow | FAD | Trypanothione reductase | / | 0.775 | |
4o5q | FAD | Alkyl hydroperoxide reductase subunit F | 1.8.1 | 0.775 | |
1ger | FAD | Glutathione reductase | 1.8.1.7 | 0.772 | |
3dk9 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.772 | |
3lzw | FAD | Ferredoxin--NADP reductase 2 | 1.18.1.2 | 0.767 | |
2eq6 | FAD | Dihydrolipoyl dehydrogenase | / | 0.765 | |
1fl2 | FAD | Alkyl hydroperoxide reductase subunit F | 1.8.1 | 0.759 | |
3fbs | FAD | Oxidoreductase | / | 0.759 | |
4opi | FDA | Conserved Archaeal protein | / | 0.759 | |
3nt6 | FAD | FAD-dependent pyridine nucleotide-disulphide oxidoreductase | / | 0.758 | |
5er0 | FAD | Uncharacterized NAD(FAD)-dependent dehydrogenase | / | 0.758 | |
4opt | FDA | Conserved Archaeal protein | / | 0.757 | |
2gr0 | FAD | Ferredoxin reductase | / | 0.756 | |
4cy8 | FDA | 2-hydroxybiphenyl-3-monooxygenase | / | 0.755 | |
1nhp | FAD | NADH peroxidase | 1.11.1.1 | 0.754 | |
3cge | FAD | Coenzyme A disulfide reductase | / | 0.752 | |
3rnm | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.752 | |
2zbw | FAD | Ferredoxin--NADP reductase | / | 0.751 | |
4emw | FAD | Coenzyme A disulfide reductase | / | 0.751 | |
4ocg | FAD | FAD-dependent pyridine nucleotide-disulphide oxidoreductase | / | 0.751 | |
3qfb | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.750 | |
5fs9 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.750 | |
3ntd | FAD | FAD-dependent pyridine nucleotide-disulphide oxidoreductase | / | 0.746 | |
3ef6 | FAD | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component | 1.18.1.3 | 0.745 | |
2gqw | FAD | Ferredoxin reductase | / | 0.743 | |
5fs7 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.743 | |
2rab | FAD | Glutathione amide reductase | / | 0.742 | |
3f8d | FAD | NADH oxidase/thioredoxin reductase | / | 0.742 | |
4h4r | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.742 | |
3lxd | FAD | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | / | 0.741 | |
4nte | FAD | DepH | / | 0.741 | |
3rp8 | FAD | FAD-dependent urate hydroxylase | / | 0.740 | |
1k0j | FAD | p-hydroxybenzoate hydroxylase | / | 0.739 | |
1zk7 | FAD | Mercuric reductase | 1.16.1.1 | 0.739 | |
4o5u | FAD | Alkyl hydroperoxide reductase subunit F | 1.8.1 | 0.739 | |
3cgd | FAD | Coenzyme A disulfide reductase | / | 0.737 | |
3urh | FAD | Dihydrolipoyl dehydrogenase | / | 0.737 | |
1gth | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.736 | |
1v59 | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.736 | |
2hqm | FAD | Glutathione reductase | 1.8.1.7 | 0.736 | |
4em4 | FAD | Coenzyme A disulfide reductase | / | 0.736 | |
4opg | FDA | Conserved Archaeal protein | / | 0.736 | |
3cgc | FAD | Coenzyme A disulfide reductase | / | 0.733 | |
2b9x | FAD | Putative aminooxidase | / | 0.732 | |
2bab | FAD | Putative aminooxidase | / | 0.732 | |
2f5z | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.731 | |
2whd | FAD | Thioredoxin reductase | / | 0.731 | |
1npx | FAD | NADH peroxidase | 1.11.1.1 | 0.730 | |
4eqw | FAD | Coenzyme A disulfide reductase | / | 0.730 | |
1grg | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.729 | |
1grh | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.729 | |
3klj | FAD | NADH-rubredoxin oxidoreductase | 1.18.1.1 | 0.728 | |
4xwz | FAD | Fructosyl amine:oxygen oxidoreductase | / | 0.728 | |
1cl0 | FAD | Thioredoxin reductase | 1.8.1.9 | 0.727 | |
3atr | FDA | Conserved Archaeal protein | / | 0.727 | |
4h4p | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.727 | |
4opl | FDA | Conserved Archaeal protein | / | 0.727 | |
1nhq | FAD | NADH peroxidase | 1.11.1.1 | 0.726 | |
2gr3 | FAD | Ferredoxin reductase | / | 0.726 | |
4h4t | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.726 | |
4h4z | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.726 | |
1m6i | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.725 | |
4h4v | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.725 | |
3ab1 | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.724 | |
4bjz | FAD | Probable salicylate monooxygenase | / | 0.723 | |
4opc | FDA | Conserved Archaeal protein | / | 0.723 | |
5fs6 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.723 | |
2jb2 | FAD | L-amino acid oxidase | / | 0.722 | |
4j2w | FAD | Kynurenine 3-monooxygenase | / | 0.722 | |
1q1r | FAD | Putidaredoxin reductase | 1.18.1.5 | 0.721 | |
3lzx | FAD | Ferredoxin--NADP reductase 2 | 1.18.1.2 | 0.721 | |
4ccq | FAD | Thioredoxin reductase | / | 0.721 | |
4m52 | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.721 | |
3cgb | FAD | Coenzyme A disulfide reductase | / | 0.720 | |
2eq7 | FAD | Dihydrolipoyl dehydrogenase | / | 0.719 | |
2gh5 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.719 | |
4fwf | FAD | Lysine-specific histone demethylase 1B | 1 | 0.718 | |
3nta | FAD | FAD-dependent pyridine nucleotide-disulphide oxidoreductase | / | 0.717 | |
4opd | FDA | Conserved Archaeal protein | / | 0.716 | |
5fs8 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.715 | |
2cdu | FAD | NADH oxidase | / | 0.714 | |
4j31 | FAD | Kynurenine 3-monooxygenase | / | 0.714 | |
1gv4 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.713 | |
4qi7 | FAD | Cellobiose dehydrogenase | / | 0.713 | |
3oc4 | FAD | Oxidoreductase, pyridine nucleotide-disulfide family | / | 0.712 | |
1bzl | FAD | Trypanothione reductase | 1.8.1.12 | 0.711 | |
2b9w | FAD | Putative aminooxidase | / | 0.711 | |
2c3c | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.711 | |
2npx | FAD | NADH peroxidase | 1.11.1.1 | 0.711 | |
4a5l | FAD | Thioredoxin reductase | / | 0.711 | |
4eqx | FAD | Coenzyme A disulfide reductase | / | 0.711 | |
4lii | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.711 | |
1d7y | FAD | Ferredoxin reductase | / | 0.710 | |
1joa | FAD | NADH peroxidase | 1.11.1.1 | 0.710 | |
4h4x | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.709 | |
2c3d | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.708 | |
2jb1 | FAD | L-amino acid oxidase | / | 0.708 | |
4ykg | FAD | Alkyl hydroperoxide reductase subunit F | 1.8.1 | 0.708 | |
2q0k | FAD | Thioredoxin reductase | 1.8.1.9 | 0.707 | |
3ean | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.707 | |
1xdi | FAD | NAD(P)H dehydrogenase (quinone) | / | 0.706 | |
1grb | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.705 | |
1q1w | FAD | Putidaredoxin reductase | 1.18.1.5 | 0.705 | |
3ish | FAD | Thioredoxin reductase | 1.8.1.9 | 0.705 | |
4jn9 | FAD | DepH | / | 0.705 | |
4ykf | FAD | Alkyl hydroperoxide reductase subunit F | 1.8.1 | 0.705 | |
1mo9 | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.703 | |
2jae | FAD | L-amino acid oxidase | / | 0.703 | |
4bk2 | FAD | Probable salicylate monooxygenase | / | 0.703 | |
4gr1 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.702 | |
4yry | FAD | Glutamate synthase, beta subunit | / | 0.702 | |
2w0h | FAD | Trypanothione reductase | / | 0.701 | |
2eq9 | FAD | Dihydrolipoyl dehydrogenase | / | 0.700 | |
2x3n | FAD | Probable FAD-dependent monooxygenase | / | 0.699 | |
4jdr | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.699 | |
5eow | FAD | 6-hydroxynicotinate 3-monooxygenase | 1.14.13.114 | 0.699 | |
2bac | FAD | Putative aminooxidase | / | 0.698 | |
3atq | FDA | Conserved Archaeal protein | / | 0.698 | |
4up3 | FAD | Thioredoxin reductase | / | 0.698 | |
2bi8 | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.697 | |
2yg5 | FAD | Putrescine oxidase | / | 0.697 | |
4j34 | FAD | Kynurenine 3-monooxygenase | / | 0.697 | |
3gd3 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.696 | |
1yqz | FAD | Coenzyme A disulfide reductase | / | 0.695 | |
2b9y | FAD | Putative aminooxidase | / | 0.695 | |
1h7w | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.694 | |
1zx9 | FAD | Mercuric reductase | 1.16.1.1 | 0.693 | |
4la1 | FAD | Thioredoxin glutathione reductase | / | 0.693 | |
1geu | FAD | Glutathione reductase | 1.8.1.7 | 0.692 | |
4qi4 | FAD | Cellobiose dehydrogenase | / | 0.692 | |
4bk3 | FAD | Probable salicylate monooxygenase | / | 0.691 | |
4j33 | FAD | Kynurenine 3-monooxygenase | / | 0.690 | |
4opu | FDA | Conserved Archaeal protein | / | 0.690 | |
1zy8 | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.689 | |
2ba9 | FAD | Putative aminooxidase | / | 0.689 | |
3ukf | FDA | UDP-galactopyranose mutase | / | 0.688 | |
5buk | FAD | FADH2-dependent halogenase | / | 0.687 | |
2yg3 | FAD | Putrescine oxidase | / | 0.685 | |
4ntc | FAD | Thioredoxin reductase gliT | / | 0.685 | |
2eq8 | FAD | Dihydrolipoyl dehydrogenase | / | 0.684 | |
4i58 | FAD | Cyclohexylamine Oxidase | / | 0.684 | |
4u8k | FDA | UDP-galactopyranose mutase | / | 0.684 | |
1gte | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.683 | |
3rha | FDA | Putrescine oxidase | / | 0.683 | |
1gra | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.682 | |
3all | FAD | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | / | 0.681 | |
4ccr | FAD | Thioredoxin reductase | / | 0.680 | |
3gmb | FAD | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | / | 0.679 | |
4z2t | FAD | 2-hydroxybiphenyl-3-monooxygenase | / | 0.679 | |
1k0l | FAD | p-hydroxybenzoate hydroxylase | / | 0.678 | |
2qa2 | FAD | Polyketide oxygenase CabE | / | 0.678 | |
2h94 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.677 | |
4u8n | FDA | UDP-galactopyranose mutase | / | 0.677 | |
4z26 | FAD | Putative GMC-type oxidoreductase R135 | 1 | 0.677 | |
2i0z | FAD | NAD(FAD)-utilizing dehydrogenases | / | 0.676 | |
3t14 | FAD | Sulfide-quinone reductase | / | 0.676 | |
3oz2 | FAD | Digeranylgeranylglycerophospholipid reductase | / | 0.675 | |
4j36 | FAD | Kynurenine 3-monooxygenase | / | 0.675 | |
4u8i | FDA | UDP-galactopyranose mutase | / | 0.675 | |
2qae | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.674 | |
3hdy | FAD | UDP-galactopyranose mutase | / | 0.674 | |
3int | FDA | UDP-galactopyranose mutase | 5.4.99.9 | 0.674 | |
4u8p | FDA | UDP-galactopyranose mutase | / | 0.674 | |
2vvl | FAD | Monoamine oxidase N | 1.4.3.4 | 0.673 | |
3uth | FDA | UDP-galactopyranose mutase | / | 0.673 | |
4h2p | FAD | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | / | 0.673 | |
4u8m | FDA | UDP-galactopyranose mutase | / | 0.673 | |
1f3p | FAD | Ferredoxin reductase | / | 0.671 | |
4x4j | FAD | Putative oxygenase | / | 0.671 | |
4bur | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.670 | |
4bv6 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.670 | |
1fec | FAD | Trypanothione reductase | 1.8.1.12 | 0.669 | |
1wam | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.669 | |
4ntd | FAD | Thioredoxin reductase | / | 0.669 | |
3p9u | FAD | TetX family tetracycline inactivation enzyme | / | 0.668 | |
4fx9 | FAD | Coenzyme A disulfide reductase | 1.8.1.14 | 0.667 | |
4gde | FDA | UDP-galactopyranose mutase | / | 0.666 | |
4k2x | FAD | Polyketide oxygenase/hydroxylase | / | 0.666 | |
4fk1 | FAD | Putative thioredoxin reductase | / | 0.665 | |
4u8j | FDA | UDP-galactopyranose mutase | / | 0.665 | |
1xpq | FAD | Polyamine oxidase FMS1 | / | 0.664 | |
3t2z | FAD | Sulfide-quinone reductase | / | 0.664 | |
2yvf | FAD | Ferredoxin reductase | / | 0.663 | |
4gus | FAD | Lysine-specific histone demethylase 1B | 1 | 0.663 | |
4gut | FAD | Lysine-specific histone demethylase 1B | 1 | 0.663 | |
1kif | FAD | D-amino-acid oxidase | 1.4.3.3 | 0.662 | |
3bg7 | FAD | Pyranose 2-oxidase | / | 0.662 | |
4eqr | FAD | Coenzyme A disulfide reductase | / | 0.662 | |
3kyb | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.661 | |
3lsh | FAD | Pyranose 2-oxidase | / | 0.661 | |
4u8o | FDA | UDP-galactopyranose mutase | / | 0.661 | |
4wx1 | FDA | UDP-galactopyranose mutase | / | 0.661 | |
4jnq | FDA | Thioredoxin reductase | / | 0.660 | |
2q0l | FAD | Thioredoxin reductase | 1.8.1.9 | 0.659 | |
3fmw | FAD | Oxygenase | / | 0.659 | |
3syi | FAD | Sulfide-quinone reductase | / | 0.659 | |
3utg | FDA | UDP-galactopyranose mutase | / | 0.659 | |
4dsh | FDA | Uncharacterized protein | / | 0.659 | |
4eqs | FAD | Coenzyme A disulfide reductase | / | 0.659 | |
2ign | FAD | Pyranose 2-oxidase | / | 0.658 | |
4dsg | FAD | Uncharacterized protein | / | 0.658 | |
1mok | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.657 | |
2rgj | FAD | Flavin-containing monooxygenase | / | 0.657 | |
2zzc | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.657 | |
3d8x | FAD | Thioredoxin reductase 1 | 1.8.1.9 | 0.657 | |
4mo2 | FAD | UDP-galactopyranose mutase | / | 0.657 | |
4h4s | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.656 | |
1ojt | FAD | Dihydrolipoyl dehydrogenase | / | 0.655 | |
4cnk | FAD | L-amino acid oxidase | / | 0.655 | |
3bi2 | FAD | Polyamine oxidase FMS1 | / | 0.654 | |
3gyi | FAD | Cholesterol oxidase | 1.1.3.6 | 0.654 | |
3ept | FDA | Putative FAD-monooxygenase | / | 0.653 | |
4j56 | FAD | Thioredoxin reductase 2 | 1.8.1.9 | 0.653 | |
1cjc | FAD | NADPH:adrenodoxin oxidoreductase, mitochondrial | 1.18.1.6 | 0.652 | |
2bi7 | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.652 | |
3cnd | FAD | Polyamine oxidase FMS1 | / | 0.652 | |
3zdn | FAD | Monoamine oxidase N | 1.4.3.4 | 0.652 | |
2gr1 | FAD | Ferredoxin reductase | / | 0.651 | |
3dk4 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.651 | |
4h4y | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.651 | |
1e1m | FAD | NADPH:adrenodoxin oxidoreductase, mitochondrial | 1.18.1.6 | 0.650 | |
1n4u | FAE | Cholesterol oxidase | 1.1.3.6 | 0.650 | |
1ng4 | FAD | Glycine oxidase | 1.4.3.19 | 0.650 | |
2r0c | FAD | Putative FAD-monooxygenase | / | 0.650 | |
4h2n | FAD | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | / | 0.650 | |
4rsl | FAD | Fructosyl peptide oxidase | / | 0.650 | |
4xwr | FAD | Cholesterol oxidase | 1.1.3.6 | 0.650 |