scPDB - 2r0c entry

Protein Data Bank Entry:

PDB ID : 2r0c

Resolution :1.800 Å

Experimental Method : X-ray

Deposition Date : 2007-08-18

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Putative FAD-monooxygenase
ID:	Q8KI25_NOCAE
AC:	Q8KI25
Organism:	Lechevalieria aerocolonigenes
Reign:	Bacteria
TaxID:	68170
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	36.182
Number of residues:	56
Including
Standard Amino Acids:	51
Non Standard Amino Acids:	0
Water Molecules:	5
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.438	1984.500

% Hydrophobic	% Polar
47.96	52.04
According to VolSite

Ligand :

HET Code:	FAD
Formula:	C27H31N9O15P2
Molecular weight:	783.534 g/mol
DrugBank ID:	DB03147
Buried Surface Area:	55.63 %
Polar Surface area:	381.7 Å2

Number of
H-Bond Acceptors:	22
H-Bond Donors:	7
Rings:	6
Aromatic rings:	3
Anionic atoms:	2
Cationic atoms:	0
Rule of Five Violation:	3
Rotatable Bonds:	13

Mass center Coordinates

X	Y	Z
20.43	-11.7211	14.9966

Binding mode :

What is Poseview ?

2D View
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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C5'	CG2	VAL- 17	4.44	0	Hydrophobic	false
O1P	N	VAL- 17	3	156.57	H-Bond (Protein Donor)	false
O3B	OE2	GLU- 36	2.86	138.44	H-Bond (Ligand Donor)	false
O3B	OE1	GLU- 36	2.66	147.51	H-Bond (Ligand Donor)	false
O2B	OE2	GLU- 36	2.61	155.71	H-Bond (Ligand Donor)	false
C2B	CG	GLN- 37	4.43	0	Hydrophobic	false
O2B	NE2	GLN- 37	3.28	147.03	H-Bond (Protein Donor)	false
N3A	N	GLN- 37	3.1	145.85	H-Bond (Protein Donor)	false
C8	CD	ARG- 46	3.65	0	Hydrophobic	false
C2'	CG1	VAL- 47	3.94	0	Hydrophobic	false
C4'	CG1	VAL- 47	4.16	0	Hydrophobic	false
N6A	O	LEU- 138	3.04	156.17	H-Bond (Ligand Donor)	false
N1A	N	LEU- 138	3.1	164.08	H-Bond (Protein Donor)	false
O4	NH1	ARG- 239	2.72	146.64	H-Bond (Protein Donor)	false
O4	NH2	ARG- 239	2.92	135.9	H-Bond (Protein Donor)	false
N5	NH2	ARG- 239	3.26	135.21	H-Bond (Protein Donor)	false
C7M	CB	TRP- 276	4.35	0	Hydrophobic	false
C1'	CZ2	TRP- 276	3.83	0	Hydrophobic	false
C6	CB	TRP- 276	3.55	0	Hydrophobic	false
O3'	OD2	ASP- 296	2.64	148.6	H-Bond (Ligand Donor)	false
C5'	CB	ASP- 296	4.49	0	Hydrophobic	false
O2P	N	ASP- 296	2.85	157.95	H-Bond (Protein Donor)	false
O2A	O	HOH- 1032	2.82	148.34	H-Bond (Protein Donor)	false
O2P	O	HOH- 1213	2.68	179.97	H-Bond (Protein Donor)	false
O1P	O	HOH- 1251	2.71	179.98	H-Bond (Protein Donor)	false