sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4dlw | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4dlw | GNP | GTPase HRas | / | 1.208 | |
| 3rs5 | GNP | GTPase HRas | / | 1.202 | |
| 3rs7 | GNP | GTPase HRas | / | 1.202 | |
| 3v4f | GNP | GTPase HRas | / | 1.202 | |
| 3lbi | GNP | GTPase HRas | / | 1.201 | |
| 3rs4 | GNP | GTPase HRas | / | 1.201 | |
| 4dlx | GNP | GTPase HRas | / | 1.200 | |
| 4dlz | GNP | GTPase HRas | / | 1.200 | |
| 5b2z | GNP | GTPase HRas | / | 1.200 | |
| 4dlt | GNP | GTPase HRas | / | 1.186 | |
| 4dlv | GNP | GTPase HRas | / | 1.185 | |
| 3lbn | GNP | GTPase HRas | / | 1.184 | |
| 3oiu | GNP | GTPase HRas | / | 1.184 | |
| 3rsl | GNP | GTPase HRas | / | 1.183 | |
| 3rs0 | GNP | GTPase HRas | / | 1.182 | |
| 2rgc | GNP | GTPase HRas | / | 1.181 | |
| 3l8y | GNP | GTPase HRas | / | 1.181 | |
| 4dls | GNP | GTPase HRas | / | 1.181 | |
| 3i3s | GNP | GTPase HRas | / | 1.180 | |
| 3k8y | GNP | GTPase HRas | / | 1.171 | |
| 2rgb | GNP | GTPase HRas | / | 1.167 | |
| 3oiw | GNP | GTPase HRas | / | 1.165 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.162 | |
| 4l9w | GNP | GTPase HRas | / | 1.152 | |
| 3lbh | GNP | GTPase HRas | / | 1.149 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.148 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.147 | |
| 3oiv | GNP | GTPase HRas | / | 1.145 | |
| 2rge | GNP | GTPase HRas | / | 1.142 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.138 | |
| 3ddc | GNP | GTPase HRas | / | 1.131 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.131 | |
| 4nyj | GNP | GTPase HRas | / | 1.129 | |
| 4g0n | GNP | GTPase HRas | / | 1.120 | |
| 4dsn | GCP | GTPase KRas | / | 1.115 | |
| 2c5l | GTP | GTPase HRas | / | 1.113 | |
| 4nyi | GNP | GTPase HRas | / | 1.109 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.100 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.093 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.090 | |
| 2rgg | GNP | GTPase HRas | / | 1.081 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.071 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.068 | |
| 4k81 | GTP | GTPase HRas | / | 1.067 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.065 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.060 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.050 | |
| 3k9l | GNP | GTPase HRas | / | 1.049 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.046 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.045 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.044 | |
| 3tgp | GNP | GTPase HRas | / | 1.044 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.038 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.035 | |
| 4dso | GSP | GTPase KRas | / | 1.035 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.032 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.031 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.021 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.018 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.017 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.015 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.014 | |
| 4xvq | GNP | GTPase HRas | / | 1.009 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.005 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.999 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.998 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.997 | |
| 4mit | GTP | Rho-related protein racC | / | 0.997 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.994 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.993 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.993 | |
| 4xvr | GNP | GTPase HRas | / | 0.989 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.984 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.984 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.982 | |
| 3kud | GDP | GTPase HRas | / | 0.980 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.980 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.979 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.974 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.970 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.968 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.965 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.963 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.959 | |
| 1lfd | GNP | GTPase HRas | / | 0.955 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.952 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.951 | |
| 4ql3 | GDP | GTPase KRas | / | 0.949 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.946 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.944 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.941 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.935 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.935 | |
| 4l9s | GDP | GTPase HRas | / | 0.934 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.933 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.931 | |
| 4wa7 | GDP | GTPase KRas | / | 0.929 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.928 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.927 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.926 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.926 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.926 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.925 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.924 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.924 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.924 | |
| 3r9x | GNP | GTPase Era | / | 0.923 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.922 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.918 | |
| 2ce2 | GDP | GTPase HRas | / | 0.918 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.914 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.913 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.913 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.912 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.912 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.912 | |
| 4q02 | GDP | GTPase KRas | / | 0.912 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.909 | |
| 4epx | GDP | GTPase KRas | / | 0.909 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.907 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.905 | |
| 4q03 | GDP | GTPase KRas | / | 0.905 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.903 | |
| 4l8g | GDP | GTPase KRas | / | 0.902 | |
| 4dsu | GDP | GTPase KRas | / | 0.898 | |
| 4tq9 | GDP | GTPase KRas | / | 0.898 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.898 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.897 | |
| 4dvg | GSP | Rho family GTPase | / | 0.895 | |
| 4ldj | GDP | GTPase KRas | / | 0.894 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.894 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.893 | |
| 2cl6 | CAG | GTPase HRas | / | 0.890 | |
| 4lv6 | GDP | GTPase KRas | / | 0.889 | |
| 4epw | GDP | GTPase KRas | / | 0.883 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.882 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.879 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.879 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.879 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.879 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.879 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.878 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.878 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.877 | |
| 3ftq | GNP | Septin-2 | / | 0.875 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.874 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.870 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.869 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.862 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.859 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.859 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.857 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.856 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.856 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.855 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.854 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.851 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.847 | |
| 4lpk | GDP | GTPase KRas | / | 0.847 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.844 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.842 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.842 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.841 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.841 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.838 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.833 | |
| 4luc | GDP | GTPase KRas | / | 0.832 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.832 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.827 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.827 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.826 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.826 | |
| 4lrw | GDP | GTPase KRas | / | 0.825 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.824 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.824 | |
| 3ref | GDP | Rho family GTPase | / | 0.824 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.821 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.821 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.821 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.820 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.818 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.817 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.816 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.816 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.816 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.815 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.815 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.815 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.814 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.813 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.813 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.812 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.810 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.810 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.808 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.808 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.806 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.805 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.805 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.795 | |
| 4db1 | ANP | Myosin-7 | / | 0.795 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.793 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.792 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.792 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.792 | |
| 4xvu | ATP | ATPase GET3 | / | 0.792 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.791 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.790 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.789 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.787 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.786 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.783 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.783 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.781 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.781 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.780 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.779 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.779 | |
| 5bn3 | ADP | NEQ263 | / | 0.779 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.776 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.776 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.773 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.772 | |
| 1ank | ANP | Adenylate kinase | / | 0.770 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.770 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.769 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.769 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.769 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.769 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.769 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.767 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.767 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.765 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.765 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.764 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.762 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.760 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.759 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.759 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.758 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.757 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.757 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.756 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 4yqf | GDP | Septin-9 | / | 0.756 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.755 | |
| 2fna | ADP | Uncharacterized protein | / | 0.755 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.755 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.755 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.752 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.751 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.750 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.750 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.750 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.750 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.750 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.749 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.748 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.748 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.748 | |
| 5cyo | GDP | Septin-9 | / | 0.748 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.747 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.744 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.743 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.743 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.742 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.740 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.740 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.740 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.740 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.739 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.739 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.738 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 4v02 | ATP | Site-determining protein | / | 0.738 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.737 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.737 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.737 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.737 | |
| 1xms | ANP | Protein RecA | / | 0.736 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.736 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.736 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.735 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.734 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.734 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.733 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.730 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.730 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.729 | |
| 4c30 | ANP | DNA helicase | / | 0.729 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.728 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.727 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.727 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.725 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.725 | |
| 1xmv | ADP | Protein RecA | / | 0.724 | |
| 2zts | ADP | Uncharacterized protein | / | 0.724 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.724 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.724 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.722 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.722 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.721 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.720 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.719 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.719 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.718 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.718 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.717 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.717 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.717 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.717 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.716 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.715 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.714 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.714 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.714 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.714 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.713 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.713 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.713 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.713 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.712 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.710 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.709 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.709 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.708 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.708 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.708 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.707 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.706 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.706 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.705 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.704 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.703 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.703 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.702 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.702 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.702 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.702 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.701 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.701 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.700 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.700 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.699 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.699 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.698 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.698 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.696 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.696 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.694 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.693 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.691 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.691 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.691 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.691 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.690 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.690 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.689 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.689 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.689 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.689 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.688 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.688 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.688 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.686 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.685 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.684 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.683 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.683 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.683 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.683 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.682 | |
| 4jlo | ADP | Adenylate kinase | / | 0.682 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.681 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.680 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.679 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.679 | |
| 2ad5 | ADP | CTP synthase | / | 0.678 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.678 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.678 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.678 | |
| 2zrj | AGS | Protein RecA | / | 0.678 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.678 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.677 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.676 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.676 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.675 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.673 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.671 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.670 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.670 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.670 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.670 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.669 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.669 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.669 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.668 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.668 | |
| 1nly | AGS | Cag alpha | / | 0.667 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.667 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.667 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.666 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.666 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.665 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.665 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.662 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.662 | |
| 5dac | AGS | Uncharacterized protein | / | 0.662 | |
| 1rqj | IPE | Farnesyl diphosphate synthase | 2.5.1.10 | 0.661 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.659 | |
| 1dvr | ATF | Adenylate kinase | / | 0.659 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.659 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.659 | |
| 2r6g | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.659 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 4rz3 | ADP | Site-determining protein | / | 0.659 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.658 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.658 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.657 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.656 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.656 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.655 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.655 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.655 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.655 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.655 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.653 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.653 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.652 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.652 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.652 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.651 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.650 |