sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2bme | GNP | Ras-related protein Rab-4A |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.159 | |
| 3lbi | GNP | GTPase HRas | / | 1.074 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.073 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.070 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.069 | |
| 3oiw | GNP | GTPase HRas | / | 1.069 | |
| 4dlw | GNP | GTPase HRas | / | 1.060 | |
| 4dlx | GNP | GTPase HRas | / | 1.060 | |
| 3i3s | GNP | GTPase HRas | / | 1.056 | |
| 3k8y | GNP | GTPase HRas | / | 1.056 | |
| 3v4f | GNP | GTPase HRas | / | 1.056 | |
| 3lbn | GNP | GTPase HRas | / | 1.055 | |
| 3l8y | GNP | GTPase HRas | / | 1.054 | |
| 4dls | GNP | GTPase HRas | / | 1.054 | |
| 4dlz | GNP | GTPase HRas | / | 1.054 | |
| 4l9w | GNP | GTPase HRas | / | 1.054 | |
| 3rs0 | GNP | GTPase HRas | / | 1.051 | |
| 3oiv | GNP | GTPase HRas | / | 1.050 | |
| 3rsl | GNP | GTPase HRas | / | 1.050 | |
| 5b2z | GNP | GTPase HRas | / | 1.050 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.042 | |
| 3rs4 | GNP | GTPase HRas | / | 1.041 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.040 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.039 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.038 | |
| 4dlt | GNP | GTPase HRas | / | 1.037 | |
| 4dlv | GNP | GTPase HRas | / | 1.037 | |
| 3rs5 | GNP | GTPase HRas | / | 1.034 | |
| 3oiu | GNP | GTPase HRas | / | 1.032 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.031 | |
| 2rgc | GNP | GTPase HRas | / | 1.031 | |
| 3rs7 | GNP | GTPase HRas | / | 1.031 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 1.027 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.027 | |
| 2rgg | GNP | GTPase HRas | / | 1.026 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.026 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.026 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.026 | |
| 2rge | GNP | GTPase HRas | / | 1.024 | |
| 3ddc | GNP | GTPase HRas | / | 1.024 | |
| 3tgp | GNP | GTPase HRas | / | 1.024 | |
| 3lbh | GNP | GTPase HRas | / | 1.021 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.020 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.017 | |
| 2rgb | GNP | GTPase HRas | / | 1.015 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.013 | |
| 4nyj | GNP | GTPase HRas | / | 1.011 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.010 | |
| 2c5l | GTP | GTPase HRas | / | 1.007 | |
| 4nyi | GNP | GTPase HRas | / | 1.007 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.006 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.006 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.004 | |
| 4xvq | GNP | GTPase HRas | / | 1.003 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.001 | |
| 3k9l | GNP | GTPase HRas | / | 1.001 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.000 | |
| 4k81 | GTP | GTPase HRas | / | 1.000 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 0.998 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.987 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 0.983 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.983 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.981 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.981 | |
| 4mit | GTP | Rho-related protein racC | / | 0.977 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.972 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.972 | |
| 4xvr | GNP | GTPase HRas | / | 0.972 | |
| 4dso | GSP | GTPase KRas | / | 0.971 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.969 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.969 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.968 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.967 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.965 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.965 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.964 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.962 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.957 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.955 | |
| 1lfd | GNP | GTPase HRas | / | 0.948 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.948 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.946 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.946 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.945 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.941 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.937 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.930 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.929 | |
| 4dvg | GSP | Rho family GTPase | / | 0.927 | |
| 4g0n | GNP | GTPase HRas | / | 0.927 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.926 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.926 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.925 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.925 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.924 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.923 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.923 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.918 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.917 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.916 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.916 | |
| 4ql3 | GDP | GTPase KRas | / | 0.914 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.912 | |
| 4q03 | GDP | GTPase KRas | / | 0.912 | |
| 3kud | GDP | GTPase HRas | / | 0.911 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.905 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.904 | |
| 4l9s | GDP | GTPase HRas | / | 0.900 | |
| 2ce2 | GDP | GTPase HRas | / | 0.898 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.898 | |
| 4lv6 | GDP | GTPase KRas | / | 0.896 | |
| 4q02 | GDP | GTPase KRas | / | 0.896 | |
| 4tq9 | GDP | GTPase KRas | / | 0.896 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.895 | |
| 4dsn | GCP | GTPase KRas | / | 0.895 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.894 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.894 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.894 | |
| 4wa7 | GDP | GTPase KRas | / | 0.894 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.893 | |
| 4dsu | GDP | GTPase KRas | / | 0.893 | |
| 4epx | GDP | GTPase KRas | / | 0.893 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.892 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.892 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.890 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.890 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.889 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.885 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.882 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.881 | |
| 2cl6 | CAG | GTPase HRas | / | 0.881 | |
| 4epw | GDP | GTPase KRas | / | 0.881 | |
| 4ldj | GDP | GTPase KRas | / | 0.879 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.878 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.877 | |
| 3r9x | GNP | GTPase Era | / | 0.877 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.874 | |
| 4db1 | ANP | Myosin-7 | / | 0.873 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.872 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.869 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.868 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.868 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.867 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.867 | |
| 4l8g | GDP | GTPase KRas | / | 0.866 | |
| 4lpk | GDP | GTPase KRas | / | 0.866 | |
| 4obe | GDP | GTPase KRas | / | 0.866 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.865 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.865 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.864 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.863 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.863 | |
| 3ftq | GNP | Septin-2 | / | 0.862 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.861 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.861 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.861 | |
| 4luc | GDP | GTPase KRas | / | 0.861 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.860 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.860 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.860 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.858 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.857 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.856 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.855 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.853 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.852 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.852 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.850 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.847 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.843 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.842 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.841 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.841 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.841 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.840 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.839 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.838 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.838 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.836 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.836 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.835 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.831 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.829 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.826 | |
| 3ref | GDP | Rho family GTPase | / | 0.826 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.824 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.822 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.821 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.820 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.820 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.819 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.819 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.817 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.813 | |
| 4lrw | GDP | GTPase KRas | / | 0.812 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.811 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.808 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.804 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.803 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.801 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.800 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.800 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.799 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.799 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.797 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.797 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.795 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.794 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.793 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.789 | |
| 5bn3 | ADP | NEQ263 | / | 0.789 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.788 | |
| 1ank | ANP | Adenylate kinase | / | 0.787 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.785 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.785 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.785 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.785 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.785 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.784 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.780 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.779 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.779 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.778 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.776 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.773 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.773 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.773 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.771 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.770 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.770 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.770 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.770 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.769 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.769 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.766 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.766 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.766 | |
| 4v02 | ATP | Site-determining protein | / | 0.765 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.764 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.763 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.763 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.763 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.763 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.762 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.762 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.760 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.760 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.758 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.756 | |
| 4xvu | ATP | ATPase GET3 | / | 0.756 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.755 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.754 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.754 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.754 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.753 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.753 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.753 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.752 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.751 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.751 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.750 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.749 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.748 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.747 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.746 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.744 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.744 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.743 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.742 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.741 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.740 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.739 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.739 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.738 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.738 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.737 | |
| 1xms | ANP | Protein RecA | / | 0.736 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.736 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.736 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.735 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.734 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.733 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.732 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.731 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.731 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.731 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.731 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.730 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.730 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.729 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.729 | |
| 5cyo | GDP | Septin-9 | / | 0.729 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.728 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.728 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.728 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.727 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.727 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.727 | |
| 2zts | ADP | Uncharacterized protein | / | 0.726 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.726 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.724 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.724 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.724 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.723 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.723 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.723 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.722 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.722 | |
| 4jky | ADP | Adenylate kinase | / | 0.722 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.721 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.721 | |
| 4ike | ADP | Adenylate kinase | / | 0.721 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.720 | |
| 2fna | ADP | Uncharacterized protein | / | 0.720 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.720 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.720 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.719 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.718 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.718 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.718 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.718 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.718 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.717 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.716 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 4yqf | GDP | Septin-9 | / | 0.716 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.715 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.715 | |
| 3ieu | GDP | GTPase Era | / | 0.715 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.715 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.714 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.714 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.713 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.713 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.713 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.712 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.712 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.712 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.711 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.710 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.709 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.709 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.709 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.709 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.709 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.708 | |
| 2eck | ADP | Adenylate kinase | / | 0.708 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.707 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.707 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.707 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.707 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.706 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.705 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.705 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.704 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.703 | |
| 4c30 | ANP | DNA helicase | / | 0.702 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.701 | |
| 4jlo | ADP | Adenylate kinase | / | 0.701 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.700 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.700 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.700 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.700 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.699 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.699 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.699 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.699 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.698 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.698 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.698 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.698 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.697 | |
| 4jld | ADP | Adenylate kinase | / | 0.697 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.696 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.696 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.696 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.696 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.695 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.695 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.694 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.694 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.694 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.693 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.693 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.691 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.691 | |
| 1nly | AGS | Cag alpha | / | 0.690 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.690 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.689 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.688 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.686 | |
| 3qpv | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.686 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.685 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.684 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.683 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.683 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.683 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.683 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.683 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.682 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.682 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.682 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.681 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.681 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.681 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.681 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.678 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.678 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.678 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.677 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.677 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.677 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.675 | |
| 2r6g | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.672 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.670 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.670 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.669 | |
| 2zr9 | DTP | Protein RecA | / | 0.669 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.668 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.668 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.668 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.666 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.665 | |
| 1dj3 | GDP | Adenylosuccinate synthetase, chloroplastic | / | 0.664 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.663 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.662 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.660 | |
| 3ump | ATP | ATP-dependent 6-phosphofructokinase isozyme 2 | 2.7.1.11 | 0.660 | |
| 4e2x | TYD | Methyltransferase | / | 0.660 | |
| 4gyi | ADP | Uncharacterized protein | / | 0.660 | |
| 4kqs | RIS | Farnesyl pyrophosphate synthase | 2.5.1.10 | 0.660 | |
| 3ez6 | ADP | Plasmid partition protein A | / | 0.659 | |
| 4rz3 | ADP | Site-determining protein | / | 0.658 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.658 | |
| 2jcs | TTP | Deoxynucleoside kinase | / | 0.657 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.657 | |
| 4oav | ACP | 2-5A-dependent ribonuclease | 3.1.26 | 0.657 | |
| 1ndc | TYD | Nucleoside diphosphate kinase, cytosolic | 2.7.4.6 | 0.656 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.656 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.656 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.655 | |
| 1dvr | ATF | Adenylate kinase | / | 0.654 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.654 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.653 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.652 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.652 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.651 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.651 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.651 | |
| 1ss9 | UPF | LgtC | / | 0.650 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.650 |