Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xhxT5MHeat shock protein HSP 90-alpha

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
2xhxT5MHeat shock protein HSP 90-alpha/1.000
1yc14BCHeat shock protein HSP 90-alpha/0.590
2xjgXJGHeat shock protein HSP 90-alpha/0.580
3vhaVHAHeat shock protein HSP 90-alpha/0.557
2qg0A94Heat shock protein HSP 90-alpha/0.552
2xhrC0PHeat shock protein HSP 90-alpha/0.546
3r4oFU3Heat shock protein HSP 90-alpha/0.546
3k974CDHeat shock protein HSP 90-alpha/0.537
2bz5AB4Heat shock protein HSP 90-alpha/0.534
3rlp3RPHeat shock protein HSP 90-alpha/0.531
1yc443PHeat shock protein HSP 90-alpha/0.529
4ipeANPTNF receptor-associated protein 1/0.526
4xcjADPHeat shock cognate 90 kDa protein/0.522
3t10ACPHeat shock protein HSP 90-alpha/0.521
2xx213CATP-dependent molecular chaperone HSP82/0.518
2vcj2EQHeat shock protein HSP 90-alpha/0.515
2breKJ2ATP-dependent molecular chaperone HSP82/0.511
4ce17FKATP-dependent molecular chaperone HSP82/0.510
2xk2ADPHeat shock protein HSP 90-alpha/0.506
2yegXQGHeat shock protein HSP 90-alpha/0.506
1osfKOSHeat shock protein HSP 90-alpha/0.504
2byi2DDHeat shock protein HSP 90-alpha/0.504
4egiB2JHeat shock protein HSP 90-alpha/0.500
3fhxPLPPyridoxal kinase2.7.1.350.498
3iedAN2HSP90/0.497
4egkRDCHeat shock protein HSP 90-alpha/0.497
1drhNAPDihydrofolate reductase1.5.1.30.495
2byh2D7Heat shock protein HSP 90-alpha/0.494
2wi2ZZ3Heat shock protein HSP 90-alpha/0.494
2yi66QMHeat shock protein HSP 90-alpha/0.493
4xclAGSHeat shock cognate 90 kDa protein/0.493
2bt0CT5Heat shock protein HSP 90-alpha/0.492
3pehIBDEndoplasmin homolog, putative/0.492
4an4DUDPutative glycosyl transferase/0.492
4jqlVJ6Heat shock protein HSP 90-alpha/0.492
2ggsNDPdTDP-4-dehydrorhamnose reductase/0.491
2cgfP2NATP-dependent molecular chaperone HSP82/0.489
1ia1NDPDihydrofolate reductase1.5.1.30.484
2iorADPChaperone protein HtpG/0.484
2xjxXJXHeat shock protein HSP 90-alpha/0.484
3whaWHAHeat shock protein HSP 90-alpha/0.483
2xhtC0YHeat shock protein HSP 90-alpha/0.481
2wi5ZZ5Heat shock protein HSP 90-alpha/0.480
1mvsDTMDihydrofolate reductase1.5.1.30.479
1pd9CO4Dihydrofolate reductase1.5.1.30.478
3nuuJOZ3-phosphoinositide-dependent protein kinase 12.7.11.10.478
2xd6XD6ATP-dependent molecular chaperone HSP82/0.477
1m78NDPDihydrofolate reductase1.5.1.30.476
2xx413IATP-dependent molecular chaperone HSP82/0.476
3hyz42CHeat shock protein HSP 90-alpha/0.476
1uy8PU5Heat shock protein HSP 90-alpha/0.475
2hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.474
2yk2YJWHeat shock protein HSP 90-alpha/0.474
1zxmANPDNA topoisomerase 2-alpha5.99.1.30.473
1dr5NAPDihydrofolate reductase1.5.1.30.472
1rx1NAPDihydrofolate reductase1.5.1.30.472
2o1vADPEndoplasmin/0.472
2xcmADPCytosolic heat shock protein 90/0.472
2yjwYJWHeat shock protein HSP 90-alpha/0.471
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.471
4b7p9UNHeat shock protein HSP 90-alpha/0.470
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.469
2uuvFADAlkyldihydroxyacetonephosphate synthase2.5.1.260.469
3hz142CHeat shock protein HSP 90-alpha/0.469
1dr2TAPDihydrofolate reductase1.5.1.30.468
2rlcCHDCholoylglycine hydrolase3.5.1.240.468
2o1uANPEndoplasmin/0.467
1rx8NAPDihydrofolate reductase1.5.1.30.466
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.466
2fxsRDAATP-dependent molecular chaperone HSP82/0.465
4xdmGDMHeat shock cognate 90 kDa protein/0.465
2a0wDIHPurine nucleoside phosphorylase2.4.2.10.464
2ye92D4Heat shock protein HSP 90-alpha/0.464
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.464
4g95OAGDihydrofolate reductase1.5.1.30.464
9mhtSAHModification methylase HhaI2.1.1.370.464
2clqSTUMitogen-activated protein kinase kinase kinase 52.7.11.250.463
3ijoB4DGlutamate receptor 2/0.463
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.463
1dr3HBIDihydrofolate reductase1.5.1.30.462
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.462
1kc1NDPdTDP-4-dehydrorhamnose reductase1.1.1.1330.462
1uykPUXHeat shock protein HSP 90-alpha/0.462
2znpK55Peroxisome proliferator-activated receptor delta/0.462
1osvCHCBile acid receptor/0.461
2wi1ZZ2Heat shock protein HSP 90-alpha/0.461
1ia4TQ6Dihydrofolate reductase1.5.1.30.460
2lfoGCHFatty acid-binding protein, liver/0.460
4awq592Heat shock protein HSP 90-alpha/0.460
4dbzNDPPutative ketoacyl reductase1.3.10.460
4egh0OYHeat shock protein HSP 90-alpha/0.460
2pr5FMNBlue-light photoreceptor/0.459
2uwd2GGHeat shock protein HSP 90-alpha/0.459
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.459
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.459
3hdhNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.459
4f700STCyclin-dependent kinase 82.7.11.220.459
4lhtCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.459
1xddAAYIntegrin alpha-L/0.458
2bsmBSMHeat shock protein HSP 90-alpha/0.458
2fwyH64Heat shock protein HSP 90-alpha/0.458
2yecXQ0Heat shock protein HSP 90-alpha/0.458
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.458
3h06VBPGlutamate receptor 2/0.458
4z24FADPutative GMC-type oxidoreductase R13510.458
2a94AP0L-lactate dehydrogenase1.1.1.270.457
4gqtADPHeat shock protein 90/0.457
1n2sNAIdTDP-4-dehydrorhamnose reductase1.1.1.1330.456
1rd7FOLDihydrofolate reductase1.5.1.30.456
4as94QSATP-dependent molecular chaperone HSP82/0.456
4z875GPInosine-5'-monophosphate dehydrogenase/0.456
1byqADPHeat shock protein HSP 90-alpha/0.455
1menGARTrifunctional purine biosynthetic protein adenosine-32.1.2.20.455
2ahvCOAAcetate CoA-transferase YdiF2.8.3.80.455
2hcdBIVVitamin D3 receptor A/0.455
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.455
3ieuGDPGTPase Era/0.455
4fj1NAP17beta-hydroxysteroid dehydrogenase/0.455
1culFOKAdenylate cyclase type 2/0.454
1culFOKAdenylate cyclase type 5/0.454
1dhjMTXDihydrofolate reductase1.5.1.30.454
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.454
1ot7CHCBile acid receptor/0.454
3w0gW07Vitamin D3 receptor/0.454
4bdcODHSerine/threonine-protein kinase Chk22.7.11.10.454
4h4uNDPBiphenyl dioxygenase ferredoxin reductase subunit/0.454
4kl9NDPDihydrofolate reductase1.5.1.30.454
2he5NDPAldo-keto reductase family 1 member C211.1.10.453
2yy2IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.453
2znq401Peroxisome proliferator-activated receptor delta/0.453
3d84NDPDihydrofolate reductase1.5.1.30.453
3lpsNOVDNA topoisomerase 4 subunit B/0.453
3oafOAGDihydrofolate reductase1.5.1.30.453
3tqaNDPDihydrofolate reductase/0.453
5eccNAPDehydrofolate reductase type I/0.453
1dr3TAPDihydrofolate reductase1.5.1.30.452
1llzFMNFerredoxin-dependent glutamate synthase 21.4.7.10.452
1pq944BOxysterols receptor LXR-beta/0.452
2ye42FYHeat shock protein HSP 90-alpha/0.452
3c0i3AMPeripheral plasma membrane protein CASK2.7.11.10.452
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.452
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.452
3etdNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.452
3fhxPXLPyridoxal kinase2.7.1.350.452
3hx4ANPCalmodulin-domain protein kinase 1/0.452
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.452
3iw1ASDSteroid C26-monooxygenase1.14.13.1410.452
3u04BB2Peptide deformylase/0.452
4gk2L66Ephrin type-A receptor 32.7.10.10.452
4udrFAD5-(hydroxymethyl)furfural oxidase/0.452
1piwNAPNADP-dependent alcohol dehydrogenase 61.1.1.20.451
1xalNAD3-dehydroquinate synthase/0.451
3hrfATP3-phosphoinositide-dependent protein kinase 12.7.11.10.451
4gh5NADShort-chain dehydrogenase/reductase SDR/0.451
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.451
4kxn6K62'-deoxynucleoside 5'-phosphate N-hydrolase 1/0.451
1ra3MTXDihydrofolate reductase1.5.1.30.450
1rszDIHPurine nucleoside phosphorylase2.4.2.10.450
2w3bNDPDihydrofolate reductase1.5.1.30.450
3b2sB2STrichothecene 3-O-acetyltransferase/0.450
3dheANDEstradiol 17-beta-dehydrogenase 11.1.1.620.450
3in6FMNUncharacterized protein/0.450
3orfNADDihydropteridine reductase1.5.1.340.450
4asf62UATP-dependent molecular chaperone HSP82/0.450
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.450
10mhSAHModification methylase HhaI2.1.1.370.449
1b2lNDCAlcohol dehydrogenase1.1.1.10.449
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.449
1y4sADPChaperone protein HtpG/0.449
2c59NADGDP-mannose 3,5-epimerase5.1.3.180.449
2ozuACOHistone acetyltransferase KAT6A/0.449
2qboCAMCamphor 5-monooxygenase1.14.15.10.449
2vci2GJHeat shock protein HSP 90-alpha/0.449
3c3dFO12-phospho-L-lactate transferase/0.449
3inxJZCHeat shock protein HSP 90-alpha/0.449
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.449
4q71FADBifunctional protein PutA/0.449
4q73FADBifunctional protein PutA/0.449
1hdrNADDihydropteridine reductase1.5.1.340.448
1p31EPUUDP-N-acetylmuramate--L-alanine ligase6.3.2.80.448
1rt9IMHPurine nucleoside phosphorylase2.4.2.10.448
2a9z26AAdenosine kinase2.7.1.200.448
2gvdFKPAdenylate cyclase type 2/0.448
2gvdFKPAdenylate cyclase type 5/0.448
3b7dCNIGlutamate receptor 2/0.448
3hadNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.448
3mddFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.448
3p62FMNPentaerythritol tetranitrate reductase/0.448
3qcy3Q33-phosphoinositide-dependent protein kinase 12.7.11.10.448
3w8eNAD3-hydroxybutyrate dehydrogenase/0.448
4bzo676Serine/threonine-protein kinase pim-12.7.11.10.448
4dfrMTXDihydrofolate reductase1.5.1.30.448
4jnkNAIL-lactate dehydrogenase A chain1.1.1.270.448
4k6fNAPPutative Acetoacetyl-CoA reductase/0.448
4l6gCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.448
5fm7ADPRuvB-like helicase/0.448
6cp4CAMCamphor 5-monooxygenase1.14.15.10.448
1dgmADNAdenosine kinase2.7.1.200.447
1me6IVSPlasmepsin-23.4.23.390.447
1ra3NAPDihydrofolate reductase1.5.1.30.447
1re7FOLDihydrofolate reductase1.5.1.30.447
2jcxNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase/0.447
2vwqNAPGlucose 1-dehydrogenase/0.447
2yejXQKHeat shock protein HSP 90-alpha/0.447
3ndcSAHPrecorrin-4 C(11)-methyltransferase2.1.1.1330.447
3oibFDAPutative acyl-CoA dehydrogenase/0.447
3rlr3RRHeat shock protein HSP 90-alpha/0.447
4a6nFADTetX family tetracycline inactivation enzyme/0.447
4iteTEYVitamin D3 receptor/0.447
2ch6ADPN-acetyl-D-glucosamine kinase2.7.1.590.446
3dys5GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
3kgaLX9MAP kinase-activated protein kinase 22.7.11.10.446
3t4nADP5'-AMP-activated protein kinase subunit gamma/0.446
3vdqNAD3-hydroxybutyrate dehydrogenase/0.446
4bb3KKAIsopenicillin N synthase1.21.3.10.446
4ftt6HKSerine/threonine-protein kinase Chk12.7.11.10.446
4i8x6P3L-lactate dehydrogenase A chain1.1.1.270.446
4lcg1WMUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.446
4paoGSPGuanine nucleotide-binding protein G(i) subunit alpha-1/0.446
4rww2BALmo2692 protein/0.446
1bim0QBRenin3.4.23.150.445
1dhfFOLDihydrofolate reductase1.5.1.30.445
1meiXMPInosine-5'-monophosphate dehydrogenase/0.445
1tl7FOKAdenylate cyclase type 2/0.445
1tl7FOKAdenylate cyclase type 5/0.445
2a0yDIHPurine nucleoside phosphorylase2.4.2.10.445
2cgv3B3Serine/threonine-protein kinase Chk12.7.11.10.445
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.445
2ydiYDISerine/threonine-protein kinase Chk12.7.11.10.445
2yejZZ3Heat shock protein HSP 90-alpha/0.445
3dogNNNCyclin-dependent kinase 22.7.11.220.445
3kjrNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.445
3mpt1GKMitogen-activated protein kinase 14/0.445
3p0jTYEPutative tyrosyl-tRNA synthetase/0.445
3zw9NADPeroxisomal bifunctional enzyme1.1.1.350.445
4b45GSPTubulin-like protein CetZ2/0.445
2e0aANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.444
2o23NAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.444
3b6zCO7Enoyl reductase LovC10.444
3zewSTUEphrin type-B receptor 42.7.10.10.444
4r1fADPDNA topoisomerase 2-alpha5.99.1.30.444
4wudANPDNA gyrase subunit B/0.444
4yqfGDPSeptin-9/0.444
4z64ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.444
1f8gNADNAD(P) transhydrogenase subunit alpha part 11.6.1.20.443
1gegNADDiacetyl reductase [(S)-acetoin forming]1.1.1.3040.443
1lsoNADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.443
2dhfDZFDihydrofolate reductase1.5.1.30.443
2xjjL81Heat shock protein HSP 90-alpha/0.443
3dt1P40Mitogen-activated protein kinase 14/0.443
3nxxNDPDihydrofolate reductase1.5.1.30.443
3qwbNDPProbable quinone oxidoreductase1.6.5.50.443
3uylTYDProbable NDP-rhamnosyltransferase/0.443
4bcrWY1Peroxisome proliferator-activated receptor alpha/0.443
4cukNAID-lactate dehydrogenase/0.443
4dptAGSMevalonate diphosphate decarboxylase/0.443
4xcvNDPProbable hydroxyacid dehydrogenase protein/0.443
4yakACOAcyl-CoA synthetase (NDP forming)/0.443
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.443
5a3bAPRSIR2 family protein/0.443
1c1dNAIPhenylalanine dehydrogenase/0.442
1dhiMTXDihydrofolate reductase1.5.1.30.442
1dz8CAMCamphor 5-monooxygenase1.14.15.10.442
1s16ANPDNA topoisomerase 4 subunit B/0.442
2chx090Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
2fj1CTCTetracycline repressor protein class D/0.442
3au8NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic1.1.1.2670.442
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
3m13FADMonomeric sarcosine oxidase1.5.3.10.442
3rmf20ZCyclin-dependent kinase 22.7.11.220.442
3vt5YI2Vitamin D3 receptor/0.442
4a8v2ANMajor pollen allergen Bet v 1-J/0.442
4ia3BIVVitamin D3 receptor A/0.442
4q72FADBifunctional protein PutA/0.442
4rrvATP3-phosphoinositide-dependent protein kinase 12.7.11.10.442
1f5fDHTSex hormone-binding globulin/0.441
1guyNADMalate dehydrogenase/0.441
1m2qMNXCasein kinase II subunit alpha2.7.11.10.441
1t87CAMCamphor 5-monooxygenase1.14.15.10.441
1t88CAMCamphor 5-monooxygenase1.14.15.10.441
1vcfFMNIsopentenyl-diphosphate delta-isomerase/0.441
1xe55FEPlasmepsin-23.4.23.390.441
2fhnBNIAvidin-related protein 4/5/0.441
2qo9ANPEphrin type-A receptor 32.7.10.10.441
3ft5MO8Heat shock protein HSP 90-alpha/0.441
3kb6NADD-lactate dehydrogenase/0.441
3mknDNBPyrimidine-specific ribonucleoside hydrolase RihB/0.441
3oqfS51Renin3.4.23.150.441
3phiNDPShikimate dehydrogenase (NADP(+))/0.441
3r83Z14Cyclin-dependent kinase 22.7.11.220.441
3w0jT08Vitamin D3 receptor/0.441
4a86H35Major pollen allergen Bet v 1-A/0.441
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441
4k28NADShikimate dehydrogenase family protein/0.441
4lxhC1EAlpha/beta hydrolase fold/0.441
4tx9AMZPhosphoribosyl isomerase A/0.441
1adfTADAlcohol dehydrogenase E chain1.1.1.10.440
1g1aNADdTDP-glucose 4,6-dehydratase/0.440
1kkq471Peroxisome proliferator-activated receptor alpha/0.440
1zrzBI1Protein kinase C iota type2.7.11.130.440
2b69NADUDP-glucuronic acid decarboxylase 14.1.1.350.440
2ccu2D9Heat shock protein HSP 90-alpha/0.440
2rhrEMOPutative ketoacyl reductase1.3.10.440
3amfFMNFMN-binding protein/0.440
3cgdCOACoenzyme A disulfide reductase/0.440
3lqfNADGalactitol dehydrogenase/0.440
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.440
4dieC5PCytidylate kinase/0.440
4j7uNAPSepiapterin reductase1.1.1.1530.440
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.440
4r87COASpermidine N(1)-acetyltransferase/0.440
4yp7NAPNicotinamide-nucleotide adenylyltransferase2.7.7.10.440
5ai5BSUBifunctional epoxide hydrolase 23.1.3.760.440
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.440