1.980 Å
X-ray
2010-07-07
Name: | 3-phosphoinositide-dependent protein kinase 1 |
---|---|
ID: | PDPK1_HUMAN |
AC: | O15530 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 25.121 |
---|---|
Number of residues: | 18 |
Including | |
Standard Amino Acids: | 18 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.858 | 526.500 |
% Hydrophobic | % Polar |
---|---|
50.00 | 50.00 |
According to VolSite |
HET Code: | JOZ |
---|---|
Formula: | C9H9NO |
Molecular weight: | 147.174 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 62.56 % |
Polar Surface area: | 29.1 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 1 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
-40.5038 | 15.3799 | 12.395 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2 | CB | LEU- 88 | 3.81 | 0 | Hydrophobic |
C3 | CG2 | VAL- 96 | 3.87 | 0 | Hydrophobic |
C8 | CG1 | VAL- 96 | 4.21 | 0 | Hydrophobic |
C8 | CB | ALA- 109 | 4.32 | 0 | Hydrophobic |
C5 | CD1 | LEU- 159 | 4.26 | 0 | Hydrophobic |
N10 | O | SER- 160 | 2.85 | 156.8 | H-Bond (Ligand Donor) |
O11 | N | ALA- 162 | 3.08 | 169.26 | H-Bond (Protein Donor) |
C8 | CD1 | LEU- 212 | 3.59 | 0 | Hydrophobic |
C7 | CD1 | LEU- 212 | 3.79 | 0 | Hydrophobic |
C5 | CB | THR- 222 | 4.13 | 0 | Hydrophobic |