1.980 Å
X-ray
2010-07-07
| Name: | 3-phosphoinositide-dependent protein kinase 1 |
|---|---|
| ID: | PDPK1_HUMAN |
| AC: | O15530 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 25.121 |
|---|---|
| Number of residues: | 18 |
| Including | |
| Standard Amino Acids: | 18 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.858 | 526.500 |
| % Hydrophobic | % Polar |
|---|---|
| 50.00 | 50.00 |
| According to VolSite | |

| HET Code: | JOZ |
|---|---|
| Formula: | C9H9NO |
| Molecular weight: | 147.174 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 62.56 % |
| Polar Surface area: | 29.1 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 1 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 0 |
| X | Y | Z |
|---|---|---|
| -40.5038 | 15.3799 | 12.395 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C2 | CB | LEU- 88 | 3.81 | 0 | Hydrophobic |
| C3 | CG2 | VAL- 96 | 3.87 | 0 | Hydrophobic |
| C8 | CG1 | VAL- 96 | 4.21 | 0 | Hydrophobic |
| C8 | CB | ALA- 109 | 4.32 | 0 | Hydrophobic |
| C5 | CD1 | LEU- 159 | 4.26 | 0 | Hydrophobic |
| N10 | O | SER- 160 | 2.85 | 156.8 | H-Bond (Ligand Donor) |
| O11 | N | ALA- 162 | 3.08 | 169.26 | H-Bond (Protein Donor) |
| C8 | CD1 | LEU- 212 | 3.59 | 0 | Hydrophobic |
| C7 | CD1 | LEU- 212 | 3.79 | 0 | Hydrophobic |
| C5 | CB | THR- 222 | 4.13 | 0 | Hydrophobic |