scPDB - 2cgv entry

Protein Data Bank Entry:

PDB ID : 2cgv

Resolution :2.600 Å

Experimental Method : X-ray

Deposition Date : 2006-03-09

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Serine/threonine-protein kinase Chk1
ID:	CHK1_HUMAN
AC:	O14757
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.7.11.1

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	54.703
Number of residues:	25
Including
Standard Amino Acids:	25
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.843	459.000

% Hydrophobic	% Polar
48.53	51.47
According to VolSite

Ligand :

HET Code:	3B3
Formula:	C12H15N4O3
Molecular weight:	263.272 g/mol
DrugBank ID:	DB07037
Buried Surface Area:	61.11 %
Polar Surface area:	118.61 Å2

Number of
H-Bond Acceptors:	5
H-Bond Donors:	3
Rings:	2
Aromatic rings:	2
Anionic atoms:	1
Cationic atoms:	2
Rule of Five Violation:	0
Rotatable Bonds:	5

Mass center Coordinates

X	Y	Z
3.19874	-5.32242	17.1664

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C1	CD2	LEU- 15	4.04	0	Hydrophobic	false
C9	CG	LEU- 15	4.26	0	Hydrophobic	false
C1A	CG	LEU- 15	4.18	0	Hydrophobic	false
C2	CG1	VAL- 23	3.45	0	Hydrophobic	false
C2	CB	ALA- 36	3.95	0	Hydrophobic	false
O	N	CYS- 87	3.07	151.44	H-Bond (Protein Donor)	false
C8A	CG	GLU- 91	3.89	0	Hydrophobic	false
O16	O	GLU- 134	2.81	160.78	H-Bond (Ligand Donor)	false
C1	CD1	LEU- 137	3.51	0	Hydrophobic	false
N	OG	SER- 147	3.24	138.95	H-Bond (Ligand Donor)	false
N	OD1	ASP- 148	3.73	0	Ionic (Ligand Cationic)	false