2.230 Å
X-ray
2002-08-08
Name: | Trifunctional purine biosynthetic protein adenosine-3 |
---|---|
ID: | PUR2_HUMAN |
AC: | P22102 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.1.2.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 39.363 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 4 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.314 | 995.625 |
% Hydrophobic | % Polar |
---|---|
51.53 | 48.47 |
According to VolSite |
HET Code: | GAR |
---|---|
Formula: | C7H14N2O8P |
Molecular weight: | 285.168 g/mol |
DrugBank ID: | DB02236 |
Buried Surface Area: | 57.59 % |
Polar Surface area: | 188.65 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
2.18328 | 27.1888 | 320.233 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O18 | N | GLY- 11 | 2.87 | 164.89 | H-Bond (Protein Donor) |
O16 | OG | SER- 12 | 3.37 | 133.51 | H-Bond (Protein Donor) |
O17 | N | SER- 12 | 2.92 | 148.51 | H-Bond (Protein Donor) |
O17 | OG | SER- 12 | 2.63 | 153.94 | H-Bond (Protein Donor) |
O16 | N | ASN- 13 | 2.87 | 159.21 | H-Bond (Protein Donor) |
O16 | ND2 | ASN- 13 | 2.92 | 153.16 | H-Bond (Protein Donor) |
C2 | CG2 | ILE- 107 | 4.33 | 0 | Hydrophobic |
O17 | NZ | LYS- 170 | 2.84 | 169.86 | H-Bond (Protein Donor) |
O17 | NZ | LYS- 170 | 2.84 | 0 | Ionic (Protein Cationic) |
O6 | OE2 | GLU- 173 | 2.6 | 160.03 | H-Bond (Ligand Donor) |
O6 | OE1 | GLU- 173 | 3.13 | 134.97 | H-Bond (Ligand Donor) |
O8 | OE1 | GLU- 173 | 2.53 | 158.09 | H-Bond (Ligand Donor) |
N19 | O | HOH- 225 | 3.05 | 176.83 | H-Bond (Ligand Donor) |
O18 | O | HOH- 231 | 3.03 | 156.84 | H-Bond (Protein Donor) |
O16 | O | HOH- 264 | 2.61 | 179.95 | H-Bond (Protein Donor) |