scPDB - 2bsm entry

Protein Data Bank Entry:

PDB ID : 2bsm

Resolution :2.050 Å

Experimental Method : X-ray

Deposition Date : 2005-05-23

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Heat shock protein HSP 90-alpha
ID:	HS90A_HUMAN
AC:	P07900
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	34.314
Number of residues:	38
Including
Standard Amino Acids:	36
Non Standard Amino Acids:	0
Water Molecules:	2
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.563	573.750

% Hydrophobic	% Polar
42.94	57.06
According to VolSite

Ligand :

HET Code:	BSM
Formula:	C19H18ClN3O4
Molecular weight:	387.817 g/mol
DrugBank ID:	DB07495
Buried Surface Area:	61.57 %
Polar Surface area:	107.47 Å2

Number of
H-Bond Acceptors:	5
H-Bond Donors:	4
Rings:	3
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	5

Mass center Coordinates

X	Y	Z
32.0698	8.75215	25.2297

Binding mode :

What is Poseview ?

2D View
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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
CL25	CB	ASN- 51	4.39	0	Hydrophobic	false
C19	CB	ASN- 51	4.01	0	Hydrophobic	false
C13	CB	ASN- 51	3.53	0	Hydrophobic	false
C14	CB	SER- 52	4.35	0	Hydrophobic	false
C19	CB	ASP- 54	4.33	0	Hydrophobic	false
C15	CB	ALA- 55	4.2	0	Hydrophobic	false
O9	NZ	LYS- 58	3.28	168.45	H-Bond (Protein Donor)	false
O23	OD2	ASP- 93	2.78	153.41	H-Bond (Ligand Donor)	false
N10	O	GLY- 97	2.9	152.92	H-Bond (Ligand Donor)	false
C16	SD	MET- 98	4.43	0	Hydrophobic	false
C11	CE	MET- 98	3.74	0	Hydrophobic	false
C17	CG2	THR- 109	4.2	0	Hydrophobic	false
CL25	CD1	PHE- 138	3.32	0	Hydrophobic	false
N5	OG1	THR- 184	3	156.94	H-Bond (Ligand Donor)	false
C14	CG2	THR- 184	3.97	0	Hydrophobic	false
C15	CG2	THR- 184	3.79	0	Hydrophobic	false
C13	CG2	VAL- 186	4.02	0	Hydrophobic	false
N5	O	HOH- 2127	3.01	123.78	H-Bond (Ligand Donor)	false