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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bsm BSM Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bsm BSMHeat shock protein HSP 90-alpha / 0.999
2cct 2E1Heat shock protein HSP 90-alpha / 0.847
2vcj 2EQHeat shock protein HSP 90-alpha / 0.824
2vci 2GJHeat shock protein HSP 90-alpha / 0.776
2yi5 YI5Heat shock protein HSP 90-alpha / 0.771
2yjw YJWHeat shock protein HSP 90-alpha / 0.759
2yk2 YJWHeat shock protein HSP 90-alpha / 0.756
3k97 4CDHeat shock protein HSP 90-alpha / 0.753
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1yc4 43PHeat shock protein HSP 90-alpha / 0.743
1yc3 4BCHeat shock protein HSP 90-alpha / 0.739
2uwd 2GGHeat shock protein HSP 90-alpha / 0.731
4efu EFUHeat shock protein HSP 90-alpha / 0.719
4egk RDCHeat shock protein HSP 90-alpha / 0.718
3hhu 819Heat shock protein HSP 90-alpha / 0.717
3k98 1RCHeat shock protein HSP 90-alpha / 0.715
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.698
3ekr PY9Heat shock protein HSP 90-alpha / 0.692
3k99 PFTHeat shock protein HSP 90-alpha / 0.689
3inw JZBHeat shock protein HSP 90-alpha / 0.684
2xab VHDHeat shock protein HSP 90-alpha / 0.679
1qy8 RDIEndoplasmin / 0.677
2xht C0YHeat shock protein HSP 90-alpha / 0.674
2xjj L81Heat shock protein HSP 90-alpha / 0.674
2xjg XJGHeat shock protein HSP 90-alpha / 0.668
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
2yi6 6QMHeat shock protein HSP 90-alpha / 0.656
2ccu 2D9Heat shock protein HSP 90-alpha / 0.652
2yec XQ0Heat shock protein HSP 90-alpha / 0.651
4bqj XKLHeat shock protein HSP 90-alpha / 0.650