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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gfdFMNIodotyrosine deiodinase 11.21.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3gfdFMNIodotyrosine deiodinase 11.21.1.11.000
4ttcFMNIodotyrosine deiodinase 1/0.615
4ttbFMNIodotyrosine deiodinase 1/0.586
3to0FMNIodotyrosine deiodinase 11.21.1.10.567
3gh8FMNIodotyrosine deiodinase 11.21.1.10.554
3hj9FMNUncharacterized protein/0.534
3eo8FMNPutative nitroreductase/0.529
1kqcFMNOxygen-insensitive NAD(P)H nitroreductase/0.512
1icuFMNOxygen-insensitive NAD(P)H nitroreductase/0.499
4eo3FMNBacterioferritin comigratory protein/NADH dehydrogenase/0.497
3ge6FMNNitroreductase/0.496
3tjzGNPADP-ribosylation factor 1/0.496
1oonFMNOxygen-insensitive NAD(P)H nitroreductase/0.493
2vkeTACTetracycline repressor protein class D/0.493
3pxvFMNNitroreductase/0.493
3eofFMNPutative oxidase/0.492
1lf3EH5Plasmepsin-23.4.23.390.491
2xrlDXTTetracycline repressor protein class D/0.490
4qlyFMNEnone reductase CLA-ER/0.489
1ykiFMNOxygen-insensitive NAD(P)H nitroreductase/0.487
1ds7FMNOxygen-insensitive NAD(P)H nitroreductase/0.486
3e39FMNNitroreductase/0.485
3qdlFMNOxygen-insensitive NADPH nitroreductase/0.485
2o7oDXTTetracycline repressor protein class D/0.484
1tehNADAlcohol dehydrogenase class-31.1.1.10.483
1icvFMNOxygen-insensitive NAD(P)H nitroreductase/0.482
1vfrFMNMajor NAD(P)H-flavin oxidoreductase1.6.990.482
3x21FMNOxygen-insensitive NAD(P)H nitroreductase/0.481
3x22FMNOxygen-insensitive NAD(P)H nitroreductase/0.481
2bkjFMNNADPH-flavin oxidoreductase/0.479
1kqdFMNOxygen-insensitive NAD(P)H nitroreductase/0.478
1oo5FMNOxygen-insensitive NAD(P)H nitroreductase/0.478
4lcjNADC-terminal-binding protein 2/0.474
4y9qC2EUncharacterized protein/0.474
1in5ADPHolliday junction ATP-dependent DNA helicase RuvB/0.473
1drhNAPDihydrofolate reductase1.5.1.30.472
1kqbFMNOxygen-insensitive NAD(P)H nitroreductase/0.472
4jtqNAPAldo-keto reductase family 1 member C2/0.472
1ma0NADAlcohol dehydrogenase class-31.1.1.10.471
2xb5I7TTetracycline repressor protein class D/0.470
2xpuTDCTetracycline repressor protein class D/0.470
3mddFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.470
1dr2TAPDihydrofolate reductase1.5.1.30.469
1kr2TADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.469
2c12FADNitroalkane oxidase1.7.3.10.469
5irnADPNucleotide binding oligomerization domain containing 2/0.469
1yb5NAPQuinone oxidoreductase1.6.5.50.468
2wzvFMNNitroreductase NfnB/0.468
4eakATP5'-AMP-activated protein kinase subunit gamma-1/0.468
2ifaFMNUncharacterized protein/0.467
3kjrNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.467
1s7gNADNAD-dependent protein deacylase 2/0.466
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.466
1f8fNADBenzyl alcohol dehydrogenase/0.465
3hyoADPPyridoxal kinase/0.465
4i4b1CV3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.880.465
1dr3TAPDihydrofolate reductase1.5.1.30.464
2g1s4IGRenin3.4.23.150.464
3koqFMNPutative nitroreductase/0.464
4ambDUDPutative glycosyl transferase/0.464
4gz612VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit/0.464
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.464
4y9lFADAcyl-CoA dehydrogenase family member 11/0.464
1e1qANPATP synthase subunit alpha, mitochondrial/0.463
1e1qANPATP synthase subunit beta, mitochondrial3.6.3.140.463
1n7hNDPGDP-mannose 4,6 dehydratase 24.2.1.470.463
2freFMNNAD(P)H-flavin oxidoreductase/0.463
3c15GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short/0.463
4b3aTACTetracycline repressor protein class D/0.463
3otwCOAPhosphopantetheine adenylyltransferase/0.462
1ipeNDPTropinone reductase 21.1.1.2360.461
2gesCOKPantothenate kinase2.7.1.330.461
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.461
1kevNDPNADP-dependent isopropanol dehydrogenase1.1.1.800.460
1ooqFMNOxygen-insensitive NAD(P)H nitroreductase/0.460
1szgFNSCytochrome b2, mitochondrial1.1.2.30.460
1yluFMNOxygen-insensitive NAD(P)H nitroreductase/0.460
2xpvMIYTetracycline repressor protein class D/0.460
2isjFMN5,6-dimethylbenzimidazole synthase1.13.11.790.459
3qlsNDPDihydrofolate reductase1.5.1.30.459
2omeNADC-terminal-binding protein 2/0.458
4fkzUD1UDP-N-acetylglucosamine 2-epimerase5.1.3.140.458
1jq5NADGlycerol dehydrogenase1.1.1.60.457
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.457
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.457
4fj2NAP17beta-hydroxysteroid dehydrogenase/0.457
4gid0GHBeta-secretase 13.4.23.460.457
1p0hACOMycothiol acetyltransferase2.3.1.1890.456
2wf4ZY4Beta-secretase 13.4.23.460.456
3c3nFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.456
1g0nNDPTetrahydroxynaphthalene reductase1.1.1.2520.455
1kqnNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.455
1x1dSAHC-20 methyltransferase/0.455
2fj1CTCTetracycline repressor protein class D/0.455
2fw3BUICarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.455
4hp8NAP2-deoxy-D-gluconate 3-dehydrogenase/0.455
4nesUD1UDP-N-acetylglucosamine 2-epimerase5.1.3.140.455
1daaPLPD-alanine aminotransferase2.6.1.210.454
1db48INPhospholipase A2, membrane associated/0.454
1rx1NAPDihydrofolate reductase1.5.1.30.454
3af1GDPPantothenate kinase2.7.1.330.454
3dopNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.454
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.454
1fcbFMNCytochrome b2, mitochondrial1.1.2.30.453
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.453
3a3gDLZLumazine protein/0.453
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.453
3jzdNADMaleylacetate reductase/0.453
4oztP1AEcdysone receptor, putative/0.453
5dqrFAD7-hydroxymethyl chlorophyll a reductase, chloroplastic1.17.7.20.453
1kp3ATPArgininosuccinate synthase6.3.4.50.452
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.452
2g1r3IGRenin3.4.23.150.452
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.452
3bk2U5PRibonuclease J/0.452
3p8jFMNPentaerythritol tetranitrate reductase/0.452
4a5lNDPThioredoxin reductase/0.452
4eb7PLPCysteine desulfurase IscS 2/0.452
4ge90L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.452
4xw4ANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.452
5dldUD1UDP-N-Acetylglucosamine 2-epimerase/0.452
1rx0FADIsobutyryl-CoA dehydrogenase, mitochondrial1.3.990.451
1t2aNDPGDP-mannose 4,6 dehydratase4.2.1.470.451
2qbuSAHPrecorrin-2 methyltransferase/0.451
2wzwFMNNitroreductase NfnB/0.451
3b70NAPEnoyl reductase LovC10.451
3p84FMNPentaerythritol tetranitrate reductase/0.451
5fkoTDCTetracycline repressor protein class D/0.451
1xl5190Gag-Pol polyprotein3.4.23.160.450
2b3dFADModulator of drug activity B/0.450
3gqvNAPEnoyl reductase LovC10.450
3ixk929Beta-secretase 13.4.23.460.450
3kgcLY7Glutamate receptor 2/0.450
1x1cSAHC-20 methyltransferase/0.449
1ykfNAPNADP-dependent isopropanol dehydrogenase1.1.1.800.449
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.449
2e15SAHDiphthine synthase/0.449
2h2qNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.449
2vprTDCTetracycline repressor protein class H/0.449
3lkiATPFructokinase/0.449
4b1rITCTetracycline repressor protein class D/0.449
5fkmTDCTetracycline repressor protein class D/0.449
2b53D23Cyclin-dependent kinase 22.7.11.220.448
2qjoNADBifunctional NMN adenylyltransferase/Nudix hydrolase2.7.7.10.448
2xpwOTCTetracycline repressor protein class D/0.448
3cosNADAlcohol dehydrogenase 41.1.1.10.448
3umsGDPGuanine nucleotide-binding protein G(i) subunit alpha-1/0.448
4auxXTCTetracycline repressor protein class D/0.448
4dpf0LGBeta-secretase 13.4.23.460.448
4hmz18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.448
4m99ACOUDP-N-acetylgalactosaminyltransferase/0.448
4p5aFADFlavin-dependent thymidylate synthase/0.448
1fy7COAHistone acetyltransferase ESA1/0.447
2qo9ANPEphrin type-A receptor 32.7.10.10.447
2y8lADP5'-AMP-activated protein kinase subunit gamma-1/0.447
2zz0FADThioredoxin reductase 1, cytoplasmic1.8.1.90.447
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.447
3q8hAO92-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/0.447
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.447
4gl4NAIAlcohol dehydrogenase class-3/0.447
5c3jFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.447
1t2cNAIL-lactate dehydrogenase1.1.1.270.446
1yc2NADNAD-dependent protein deacylase 2/0.446
2jk6FADTrypanothione reductase/0.446
2pk3GDDGDP-6-deoxy-D-mannose reductase/0.446
2y05NAPProstaglandin reductase 1/0.446
2ym1NAPPhenylacetone monooxygenase1.14.13.920.446
3h06VBPGlutamate receptor 2/0.446
3phiNDPShikimate dehydrogenase (NADP(+))/0.446
1typFADTrypanothione reductase1.8.1.120.445
2y4gTIRTamL/0.445
2z1mNDPGDP-mannose 4,6-dehydratase/0.445
4blrUTPNTPase P4/0.445
1e1cDCAMethylmalonyl-CoA mutase large subunit5.4.99.20.444
1ve3SAMUncharacterized protein/0.444
2g25TDKPyruvate dehydrogenase E1 component1.2.4.10.444
2il2LIXRenin3.4.23.150.444
2ou2ACOHistone acetyltransferase KAT5/0.444
2zb3NDPProstaglandin reductase 21.3.1.480.444
4d89BXDBeta-secretase 13.4.23.460.444
4gg1TZDBenzoylformate decarboxylase4.1.1.70.444
4panGDPGuanine nucleotide-binding protein G(i) subunit alpha-1/0.444
1bim0QBRenin3.4.23.150.443
1lbcCYZGlutamate receptor 2/0.443
1tsxUMPThymidylate synthase/0.443
1yqdNAPSinapyl alcohol dehydrogenase/0.443
2b4qNAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.443
2ebaFADPutative glutaryl-CoA dehydrogenase/0.443
2q14ADPPhosphohydrolase/0.443
3lpiZ74Beta-secretase 13.4.23.460.443
3tr05GPGuanylate kinase/0.443
4jnkNAIL-lactate dehydrogenase A chain1.1.1.270.443
4nauAGSPhosphopantetheine adenylyltransferase/0.443
5e5h0T1Succinyl-CoA:acetate CoA-transferase/0.443
1udaUFGUDP-glucose 4-epimerase5.1.3.20.442
1y3aGDPGuanine nucleotide-binding protein G(i) subunit alpha-1/0.442
2c29NAPDihydroflavonol 4-reductase/0.442
2ibwCOAAcetyl-CoA acetyltransferase, mitochondrial2.3.1.90.442
2iko7IGRenin3.4.23.150.442
2ooyATP5'-AMP-activated protein kinase subunit gamma/0.442
2rcyNAPPyrroline-5-carboxylate reductase/0.442
3d91REMRenin3.4.23.150.442
3ukfGDUUDP-galactopyranose mutase/0.442
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
4bcaFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.442
4yaiNAIC alpha-dehydrogenase/0.442
1ht0NADAlcohol dehydrogenase 1C1.1.1.10.441
1i2bNADUDP-sulfoquinovose synthase, chloroplastic3.13.1.10.441
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.441
1q5mNDPProstaglandin-E(2) 9-reductase1.1.1.1890.441
1reqDCAMethylmalonyl-CoA mutase large subunit5.4.99.20.441
2gqwFADFerredoxin reductase/0.441
3a5yKAAElongation factor P--(R)-beta-lysine ligase/0.441
3bemFMNPutative NAD(P)H nitroreductase MhqN10.441
3bv2P38Mitogen-activated protein kinase 14/0.441
3pfdFDAAcyl-CoA dehydrogenase FadE25/0.441
4briUNPEctonucleoside triphosphate diphosphohydrolase I/0.441
4hmsFMNPhenazine biosynthesis protein PhzG1.40.441
4qxq1YEStimulator of interferon genes protein/0.441
4ytnFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.441
1fdrFADFerredoxin--NADP reductase1.18.1.20.440
1qiqACCIsopenicillin N synthase1.21.3.10.440
1tkcM6TTransketolase 12.2.1.10.440
1vl8NAPOxidoreductase, short chain dehydrogenase/reductase family/0.440
1xddAAYIntegrin alpha-L/0.440
1xe55FEPlasmepsin-23.4.23.390.440
2c1zU2FAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.440
2vkvTDCTetracycline repressor protein class D/0.440
2ylrNAPPhenylacetone monooxygenase1.14.13.920.440
3dvlATPCircadian clock protein kinase KaiC2.7.11.10.440
3g1rNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.440
3zbrNAP2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.440
4dfg0JVGag-Pol polyprotein3.4.23.160.440
4m6jNDPDihydrofolate reductase1.5.1.30.440
4opgFDAConserved Archaeal protein/0.440
5iqiGNPBifunctional AAC/APH2.3.10.440