Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
3gfd | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 |
PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
---|---|---|---|---|---|
3gfd | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 | 1.000 | |
4ttc | FMN | Iodotyrosine deiodinase 1 | / | 0.615 | |
4ttb | FMN | Iodotyrosine deiodinase 1 | / | 0.586 | |
3to0 | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 | 0.567 | |
3gh8 | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 | 0.554 | |
3hj9 | FMN | Uncharacterized protein | / | 0.534 | |
3eo8 | FMN | Putative nitroreductase | / | 0.529 | |
1kqc | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.512 | |
1icu | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.499 | |
4eo3 | FMN | Bacterioferritin comigratory protein/NADH dehydrogenase | / | 0.497 | |
3ge6 | FMN | Nitroreductase | / | 0.496 | |
3tjz | GNP | ADP-ribosylation factor 1 | / | 0.496 | |
1oon | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.493 | |
2vke | TAC | Tetracycline repressor protein class D | / | 0.493 | |
3pxv | FMN | Nitroreductase | / | 0.493 | |
3eof | FMN | Putative oxidase | / | 0.492 | |
1lf3 | EH5 | Plasmepsin-2 | 3.4.23.39 | 0.491 | |
2xrl | DXT | Tetracycline repressor protein class D | / | 0.490 | |
4qly | FMN | Enone reductase CLA-ER | / | 0.489 | |
1yki | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.487 | |
1ds7 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.486 | |
3e39 | FMN | Nitroreductase | / | 0.485 | |
3qdl | FMN | Oxygen-insensitive NADPH nitroreductase | / | 0.485 | |
2o7o | DXT | Tetracycline repressor protein class D | / | 0.484 | |
1teh | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.483 | |
1icv | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.482 | |
1vfr | FMN | Major NAD(P)H-flavin oxidoreductase | 1.6.99 | 0.482 | |
3x21 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.481 | |
3x22 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.481 | |
2bkj | FMN | NADPH-flavin oxidoreductase | / | 0.479 | |
1kqd | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.478 | |
1oo5 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.478 | |
4lcj | NAD | C-terminal-binding protein 2 | / | 0.474 | |
4y9q | C2E | Uncharacterized protein | / | 0.474 | |
1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.473 | |
1drh | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.472 | |
1kqb | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.472 | |
4jtq | NAP | Aldo-keto reductase family 1 member C2 | / | 0.472 | |
1ma0 | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.471 | |
2xb5 | I7T | Tetracycline repressor protein class D | / | 0.470 | |
2xpu | TDC | Tetracycline repressor protein class D | / | 0.470 | |
3mdd | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.470 | |
1dr2 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.469 | |
1kr2 | TAD | Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 | 2.7.7.1 | 0.469 | |
2c12 | FAD | Nitroalkane oxidase | 1.7.3.1 | 0.469 | |
5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.469 | |
1yb5 | NAP | Quinone oxidoreductase | 1.6.5.5 | 0.468 | |
2wzv | FMN | Nitroreductase NfnB | / | 0.468 | |
4eak | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.468 | |
2ifa | FMN | Uncharacterized protein | / | 0.467 | |
3kjr | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.467 | |
1s7g | NAD | NAD-dependent protein deacylase 2 | / | 0.466 | |
2ojt | UBA | Glutamate receptor ionotropic, kainate 1 | / | 0.466 | |
1f8f | NAD | Benzyl alcohol dehydrogenase | / | 0.465 | |
3hyo | ADP | Pyridoxal kinase | / | 0.465 | |
4i4b | 1CV | 3-hydroxy-3-methylglutaryl-coenzyme A reductase | 1.1.1.88 | 0.465 | |
1dr3 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.464 | |
2g1s | 4IG | Renin | 3.4.23.15 | 0.464 | |
3koq | FMN | Putative nitroreductase | / | 0.464 | |
4amb | DUD | Putative glycosyl transferase | / | 0.464 | |
4gz6 | 12V | UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit | / | 0.464 | |
4jnk | ZHK | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.464 | |
4y9l | FAD | Acyl-CoA dehydrogenase family member 11 | / | 0.464 | |
1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.463 | |
1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.463 | |
1n7h | NDP | GDP-mannose 4,6 dehydratase 2 | 4.2.1.47 | 0.463 | |
2fre | FMN | NAD(P)H-flavin oxidoreductase | / | 0.463 | |
3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.463 | |
4b3a | TAC | Tetracycline repressor protein class D | / | 0.463 | |
3otw | COA | Phosphopantetheine adenylyltransferase | / | 0.462 | |
1ipe | NDP | Tropinone reductase 2 | 1.1.1.236 | 0.461 | |
2ges | COK | Pantothenate kinase | 2.7.1.33 | 0.461 | |
3kjs | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.461 | |
1kev | NDP | NADP-dependent isopropanol dehydrogenase | 1.1.1.80 | 0.460 | |
1ooq | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.460 | |
1szg | FNS | Cytochrome b2, mitochondrial | 1.1.2.3 | 0.460 | |
1ylu | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.460 | |
2xpv | MIY | Tetracycline repressor protein class D | / | 0.460 | |
2isj | FMN | 5,6-dimethylbenzimidazole synthase | 1.13.11.79 | 0.459 | |
3qls | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
2ome | NAD | C-terminal-binding protein 2 | / | 0.458 | |
4fkz | UD1 | UDP-N-acetylglucosamine 2-epimerase | 5.1.3.14 | 0.458 | |
1jq5 | NAD | Glycerol dehydrogenase | 1.1.1.6 | 0.457 | |
2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.457 | |
2qs3 | UBE | Glutamate receptor ionotropic, kainate 1 | / | 0.457 | |
4fj2 | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.457 | |
4gid | 0GH | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.456 | |
2wf4 | ZY4 | Beta-secretase 1 | 3.4.23.46 | 0.456 | |
3c3n | FMN | Dihydroorotate dehydrogenase (fumarate) | 1.3.98.1 | 0.456 | |
1g0n | NDP | Tetrahydroxynaphthalene reductase | 1.1.1.252 | 0.455 | |
1kqn | NAD | Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 | 2.7.7.1 | 0.455 | |
1x1d | SAH | C-20 methyltransferase | / | 0.455 | |
2fj1 | CTC | Tetracycline repressor protein class D | / | 0.455 | |
2fw3 | BUI | Carnitine O-palmitoyltransferase 2, mitochondrial | 2.3.1.21 | 0.455 | |
4hp8 | NAP | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.455 | |
4nes | UD1 | UDP-N-acetylglucosamine 2-epimerase | 5.1.3.14 | 0.455 | |
1daa | PLP | D-alanine aminotransferase | 2.6.1.21 | 0.454 | |
1db4 | 8IN | Phospholipase A2, membrane associated | / | 0.454 | |
1rx1 | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.454 | |
3af1 | GDP | Pantothenate kinase | 2.7.1.33 | 0.454 | |
3dop | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.454 | |
5b1y | NDP | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.454 | |
1fcb | FMN | Cytochrome b2, mitochondrial | 1.1.2.3 | 0.453 | |
1udy | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.453 | |
3a3g | DLZ | Lumazine protein | / | 0.453 | |
3inv | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.453 | |
3jzd | NAD | Maleylacetate reductase | / | 0.453 | |
4ozt | P1A | Ecdysone receptor, putative | / | 0.453 | |
5dqr | FAD | 7-hydroxymethyl chlorophyll a reductase, chloroplastic | 1.17.7.2 | 0.453 | |
1kp3 | ATP | Argininosuccinate synthase | 6.3.4.5 | 0.452 | |
1u8v | FAD | 4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase | / | 0.452 | |
2g1r | 3IG | Renin | 3.4.23.15 | 0.452 | |
2ztl | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.452 | |
3bk2 | U5P | Ribonuclease J | / | 0.452 | |
3p8j | FMN | Pentaerythritol tetranitrate reductase | / | 0.452 | |
4a5l | NDP | Thioredoxin reductase | / | 0.452 | |
4eb7 | PLP | Cysteine desulfurase IscS 2 | / | 0.452 | |
4ge9 | 0L0 | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.452 | |
4xw4 | ANP | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.452 | |
5dld | UD1 | UDP-N-Acetylglucosamine 2-epimerase | / | 0.452 | |
1rx0 | FAD | Isobutyryl-CoA dehydrogenase, mitochondrial | 1.3.99 | 0.451 | |
1t2a | NDP | GDP-mannose 4,6 dehydratase | 4.2.1.47 | 0.451 | |
2qbu | SAH | Precorrin-2 methyltransferase | / | 0.451 | |
2wzw | FMN | Nitroreductase NfnB | / | 0.451 | |
3b70 | NAP | Enoyl reductase LovC | 1 | 0.451 | |
3p84 | FMN | Pentaerythritol tetranitrate reductase | / | 0.451 | |
5fko | TDC | Tetracycline repressor protein class D | / | 0.451 | |
1xl5 | 190 | Gag-Pol polyprotein | 3.4.23.16 | 0.450 | |
2b3d | FAD | Modulator of drug activity B | / | 0.450 | |
3gqv | NAP | Enoyl reductase LovC | 1 | 0.450 | |
3ixk | 929 | Beta-secretase 1 | 3.4.23.46 | 0.450 | |
3kgc | LY7 | Glutamate receptor 2 | / | 0.450 | |
1x1c | SAH | C-20 methyltransferase | / | 0.449 | |
1ykf | NAP | NADP-dependent isopropanol dehydrogenase | 1.1.1.80 | 0.449 | |
2cmj | NAP | Isocitrate dehydrogenase [NADP] cytoplasmic | 1.1.1.42 | 0.449 | |
2e15 | SAH | Diphthine synthase | / | 0.449 | |
2h2q | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.449 | |
2vpr | TDC | Tetracycline repressor protein class H | / | 0.449 | |
3lki | ATP | Fructokinase | / | 0.449 | |
4b1r | ITC | Tetracycline repressor protein class D | / | 0.449 | |
5fkm | TDC | Tetracycline repressor protein class D | / | 0.449 | |
2b53 | D23 | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.448 | |
2qjo | NAD | Bifunctional NMN adenylyltransferase/Nudix hydrolase | 2.7.7.1 | 0.448 | |
2xpw | OTC | Tetracycline repressor protein class D | / | 0.448 | |
3cos | NAD | Alcohol dehydrogenase 4 | 1.1.1.1 | 0.448 | |
3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.448 | |
4aux | XTC | Tetracycline repressor protein class D | / | 0.448 | |
4dpf | 0LG | Beta-secretase 1 | 3.4.23.46 | 0.448 | |
4hmz | 18T | dTDP-4-dehydro-6-deoxyglucose 3-epimerase | 5.1.3.27 | 0.448 | |
4m99 | ACO | UDP-N-acetylgalactosaminyltransferase | / | 0.448 | |
4p5a | FAD | Flavin-dependent thymidylate synthase | / | 0.448 | |
1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.447 | |
2qo9 | ANP | Ephrin type-A receptor 3 | 2.7.10.1 | 0.447 | |
2y8l | ADP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.447 | |
2zz0 | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.447 | |
3dga | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.447 | |
3q8h | AO9 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | / | 0.447 | |
3te5 | NAI | 5'-AMP-activated protein kinase subunit gamma | / | 0.447 | |
4gl4 | NAI | Alcohol dehydrogenase class-3 | / | 0.447 | |
5c3j | FAD | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | / | 0.447 | |
1t2c | NAI | L-lactate dehydrogenase | 1.1.1.27 | 0.446 | |
1yc2 | NAD | NAD-dependent protein deacylase 2 | / | 0.446 | |
2jk6 | FAD | Trypanothione reductase | / | 0.446 | |
2pk3 | GDD | GDP-6-deoxy-D-mannose reductase | / | 0.446 | |
2y05 | NAP | Prostaglandin reductase 1 | / | 0.446 | |
2ym1 | NAP | Phenylacetone monooxygenase | 1.14.13.92 | 0.446 | |
3h06 | VBP | Glutamate receptor 2 | / | 0.446 | |
3phi | NDP | Shikimate dehydrogenase (NADP(+)) | / | 0.446 | |
1typ | FAD | Trypanothione reductase | 1.8.1.12 | 0.445 | |
2y4g | TIR | TamL | / | 0.445 | |
2z1m | NDP | GDP-mannose 4,6-dehydratase | / | 0.445 | |
4blr | UTP | NTPase P4 | / | 0.445 | |
1e1c | DCA | Methylmalonyl-CoA mutase large subunit | 5.4.99.2 | 0.444 | |
1ve3 | SAM | Uncharacterized protein | / | 0.444 | |
2g25 | TDK | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.444 | |
2il2 | LIX | Renin | 3.4.23.15 | 0.444 | |
2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.444 | |
2zb3 | NDP | Prostaglandin reductase 2 | 1.3.1.48 | 0.444 | |
4d89 | BXD | Beta-secretase 1 | 3.4.23.46 | 0.444 | |
4gg1 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.444 | |
4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.444 | |
1bim | 0QB | Renin | 3.4.23.15 | 0.443 | |
1lbc | CYZ | Glutamate receptor 2 | / | 0.443 | |
1tsx | UMP | Thymidylate synthase | / | 0.443 | |
1yqd | NAP | Sinapyl alcohol dehydrogenase | / | 0.443 | |
2b4q | NAP | Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase | 1.1.1.100 | 0.443 | |
2eba | FAD | Putative glutaryl-CoA dehydrogenase | / | 0.443 | |
2q14 | ADP | Phosphohydrolase | / | 0.443 | |
3lpi | Z74 | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
3tr0 | 5GP | Guanylate kinase | / | 0.443 | |
4jnk | NAI | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.443 | |
4nau | AGS | Phosphopantetheine adenylyltransferase | / | 0.443 | |
5e5h | 0T1 | Succinyl-CoA:acetate CoA-transferase | / | 0.443 | |
1uda | UFG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.442 | |
1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.442 | |
2c29 | NAP | Dihydroflavonol 4-reductase | / | 0.442 | |
2ibw | COA | Acetyl-CoA acetyltransferase, mitochondrial | 2.3.1.9 | 0.442 | |
2iko | 7IG | Renin | 3.4.23.15 | 0.442 | |
2ooy | ATP | 5'-AMP-activated protein kinase subunit gamma | / | 0.442 | |
2rcy | NAP | Pyrroline-5-carboxylate reductase | / | 0.442 | |
3d91 | REM | Renin | 3.4.23.15 | 0.442 | |
3ukf | GDU | UDP-galactopyranose mutase | / | 0.442 | |
4anx | 534 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.442 | |
4bca | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.442 | |
4yai | NAI | C alpha-dehydrogenase | / | 0.442 | |
1ht0 | NAD | Alcohol dehydrogenase 1C | 1.1.1.1 | 0.441 | |
1i2b | NAD | UDP-sulfoquinovose synthase, chloroplastic | 3.13.1.1 | 0.441 | |
1nuu | NAD | Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 | / | 0.441 | |
1q5m | NDP | Prostaglandin-E(2) 9-reductase | 1.1.1.189 | 0.441 | |
1req | DCA | Methylmalonyl-CoA mutase large subunit | 5.4.99.2 | 0.441 | |
2gqw | FAD | Ferredoxin reductase | / | 0.441 | |
3a5y | KAA | Elongation factor P--(R)-beta-lysine ligase | / | 0.441 | |
3bem | FMN | Putative NAD(P)H nitroreductase MhqN | 1 | 0.441 | |
3bv2 | P38 | Mitogen-activated protein kinase 14 | / | 0.441 | |
3pfd | FDA | Acyl-CoA dehydrogenase FadE25 | / | 0.441 | |
4bri | UNP | Ectonucleoside triphosphate diphosphohydrolase I | / | 0.441 | |
4hms | FMN | Phenazine biosynthesis protein PhzG | 1.4 | 0.441 | |
4qxq | 1YE | Stimulator of interferon genes protein | / | 0.441 | |
4ytn | FAD | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | / | 0.441 | |
1fdr | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.440 | |
1qiq | ACC | Isopenicillin N synthase | 1.21.3.1 | 0.440 | |
1tkc | M6T | Transketolase 1 | 2.2.1.1 | 0.440 | |
1vl8 | NAP | Oxidoreductase, short chain dehydrogenase/reductase family | / | 0.440 | |
1xdd | AAY | Integrin alpha-L | / | 0.440 | |
1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.440 | |
2c1z | U2F | Anthocyanidin 3-O-glucosyltransferase 2 | 2.4.1.115 | 0.440 | |
2vkv | TDC | Tetracycline repressor protein class D | / | 0.440 | |
2ylr | NAP | Phenylacetone monooxygenase | 1.14.13.92 | 0.440 | |
3dvl | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.440 | |
3g1r | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.440 | |
3zbr | NAP | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.440 | |
4dfg | 0JV | Gag-Pol polyprotein | 3.4.23.16 | 0.440 | |
4m6j | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
4opg | FDA | Conserved Archaeal protein | / | 0.440 | |
5iqi | GNP | Bifunctional AAC/APH | 2.3.1 | 0.440 |