2.800 Å
X-ray
2015-06-17
Name: | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | Succinate dehydrogenase cytochrome b560 |
---|---|---|
ID: | O44074_ASCSU | F1LC27_ASCSU |
AC: | O44074 | F1LC27 |
Organism: | Ascaris suum | |
Reign: | Eukaryota | |
TaxID: | 6253 | |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
F | 35 % |
G | 52 % |
H | 13 % |
B-Factor: | 54.312 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 22 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.873 | 1687.500 |
% Hydrophobic | % Polar |
---|---|
58.20 | 41.80 |
According to VolSite |
HET Code: | UQ1 |
---|---|
Formula: | C14H18O4 |
Molecular weight: | 250.290 g/mol |
DrugBank ID: | DB08689 |
Buried Surface Area: | 52.03 % |
Polar Surface area: | 52.6 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 0 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
60.6892 | -47.1817 | 89.9752 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C7 | CD2 | LEU- 60 | 3.8 | 0 | Hydrophobic |
CM5 | CZ3 | TRP- 69 | 3.45 | 0 | Hydrophobic |
O3 | OG | SER- 72 | 3.37 | 151.19 | H-Bond (Protein Donor) |
CM3 | CB | SER- 72 | 4.24 | 0 | Hydrophobic |
CM3 | CD | ARG- 76 | 3.79 | 0 | Hydrophobic |
O1 | OH | TYR- 107 | 2.6 | 140.57 | H-Bond (Protein Donor) |
C11 | CE2 | TYR- 107 | 3.65 | 0 | Hydrophobic |
CM2 | CB | PRO- 193 | 4.11 | 0 | Hydrophobic |
C7 | CZ2 | TRP- 197 | 3.54 | 0 | Hydrophobic |
C11 | CZ2 | TRP- 197 | 3.94 | 0 | Hydrophobic |
CM2 | CD1 | ILE- 242 | 3.98 | 0 | Hydrophobic |