2.800 Å
X-ray
2015-06-17
| Name: | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | Succinate dehydrogenase cytochrome b560 |
|---|---|---|
| ID: | O44074_ASCSU | F1LC27_ASCSU |
| AC: | O44074 | F1LC27 |
| Organism: | Ascaris suum | |
| Reign: | Eukaryota | |
| TaxID: | 6253 | |
| EC Number: | / | |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| F | 35 % |
| G | 52 % |
| H | 13 % |
| B-Factor: | 54.312 |
|---|---|
| Number of residues: | 23 |
| Including | |
| Standard Amino Acids: | 22 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.873 | 1687.500 |
| % Hydrophobic | % Polar |
|---|---|
| 58.20 | 41.80 |
| According to VolSite | |

| HET Code: | UQ1 |
|---|---|
| Formula: | C14H18O4 |
| Molecular weight: | 250.290 g/mol |
| DrugBank ID: | DB08689 |
| Buried Surface Area: | 52.03 % |
| Polar Surface area: | 52.6 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 0 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 60.6892 | -47.1817 | 89.9752 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C7 | CD2 | LEU- 60 | 3.8 | 0 | Hydrophobic |
| CM5 | CZ3 | TRP- 69 | 3.45 | 0 | Hydrophobic |
| O3 | OG | SER- 72 | 3.37 | 151.19 | H-Bond (Protein Donor) |
| CM3 | CB | SER- 72 | 4.24 | 0 | Hydrophobic |
| CM3 | CD | ARG- 76 | 3.79 | 0 | Hydrophobic |
| O1 | OH | TYR- 107 | 2.6 | 140.57 | H-Bond (Protein Donor) |
| C11 | CE2 | TYR- 107 | 3.65 | 0 | Hydrophobic |
| CM2 | CB | PRO- 193 | 4.11 | 0 | Hydrophobic |
| C7 | CZ2 | TRP- 197 | 3.54 | 0 | Hydrophobic |
| C11 | CZ2 | TRP- 197 | 3.94 | 0 | Hydrophobic |
| CM2 | CD1 | ILE- 242 | 3.98 | 0 | Hydrophobic |