2.200 Å
X-ray
2007-05-23
Name: | Phosphohydrolase |
---|---|
ID: | Q8A013_BACTN |
AC: | Q8A013 |
Organism: | Bacteroides thetaiotaomicron |
Reign: | Bacteria |
TaxID: | 226186 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 4 % |
C | 46 % |
D | 50 % |
B-Factor: | 32.923 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.113 | 941.625 |
% Hydrophobic | % Polar |
---|---|
28.67 | 71.33 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 44.27 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-35.8777 | -22.9705 | -54.3503 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | O | ILE- 7 | 2.55 | 163.54 | H-Bond (Ligand Donor) |
N7 | OH | TYR- 24 | 2.79 | 164.12 | H-Bond (Protein Donor) |
N6 | OE1 | GLN- 33 | 3.31 | 152.86 | H-Bond (Ligand Donor) |
C4' | CG1 | VAL- 47 | 4.05 | 0 | Hydrophobic |
O3B | NZ | LYS- 202 | 3.89 | 0 | Ionic (Protein Cationic) |
O2A | OG1 | THR- 226 | 3.14 | 145.18 | H-Bond (Protein Donor) |
C5' | CB | THR- 226 | 3.94 | 0 | Hydrophobic |
O1A | NH1 | ARG- 313 | 3.25 | 171.86 | H-Bond (Protein Donor) |
O5' | NH2 | ARG- 313 | 3.37 | 160.43 | H-Bond (Protein Donor) |
DuAr | CZ | ARG- 313 | 3.65 | 18.85 | Pi/Cation |
O2' | O | HOH- 534 | 3.42 | 180 | H-Bond (Protein Donor) |