1.800 Å
X-ray
2009-12-03
Name: | Nitroreductase NfnB |
---|---|
ID: | NFNB_MYCS2 |
AC: | A0R6D0 |
Organism: | Mycobacterium smegmatis 155) |
Reign: | Bacteria |
TaxID: | 246196 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 94 % |
B | 6 % |
B-Factor: | 29.819 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | FMN |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.129 | 452.250 |
% Hydrophobic | % Polar |
---|---|
29.10 | 70.90 |
According to VolSite |
HET Code: | NDP |
---|---|
Formula: | C21H26N7O17P3 |
Molecular weight: | 741.389 g/mol |
DrugBank ID: | DB02338 |
Buried Surface Area: | 48.79 % |
Polar Surface area: | 404.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 22 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
-15.2629 | -71.3847 | -19.2222 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5D | CE1 | TYR- 92 | 4.29 | 0 | Hydrophobic |
C5N | CB | TYR- 92 | 4 | 0 | Hydrophobic |
O2N | NE | ARG- 105 | 3.19 | 134.75 | H-Bond (Protein Donor) |
O2N | NH2 | ARG- 105 | 2.69 | 160.17 | H-Bond (Protein Donor) |
O2N | CZ | ARG- 105 | 3.36 | 0 | Ionic (Protein Cationic) |
C3B | CG | ARG- 105 | 3.99 | 0 | Hydrophobic |
C5B | CE2 | PHE- 108 | 4.38 | 0 | Hydrophobic |
O1A | OH | TYR- 113 | 2.86 | 161.7 | H-Bond (Protein Donor) |
N6A | O | ILE- 118 | 3.17 | 142.38 | H-Bond (Ligand Donor) |
C2D | CD1 | LEU- 182 | 4.45 | 0 | Hydrophobic |
C4D | CB | LEU- 182 | 4.36 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 185 | 3.79 | 0 | Aromatic Face/Face |
N3A | O | HOH- 2093 | 2.81 | 149.52 | H-Bond (Protein Donor) |