scPDB - 2ooy entry

Protein Data Bank Entry:

PDB ID : 2ooy

Resolution :2.880 Å

Experimental Method : X-ray

Deposition Date : 2007-01-26

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	5'-AMP-activated protein kinase subunit gamma
ID:	AAKG_SCHPO
AC:	Q10343
Organism:	Schizosaccharomyces pombe
Reign:	Eukaryota
TaxID:	284812
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
E	100 %

Ligand binding site composition:

B-Factor:	46.175
Number of residues:	32
Including
Standard Amino Acids:	32
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.918	735.750

% Hydrophobic	% Polar
46.33	53.67
According to VolSite

Ligand :

HET Code:	ATP
Formula:	C10H12N5O13P3
Molecular weight:	503.149 g/mol
DrugBank ID:	DB00171
Buried Surface Area:	67.64 %
Polar Surface area:	319.88 Å2

Number of
H-Bond Acceptors:	17
H-Bond Donors:	3
Rings:	3
Aromatic rings:	2
Anionic atoms:	4
Cationic atoms:	0
Rule of Five Violation:	2
Rotatable Bonds:	8

Mass center Coordinates

X	Y	Z
25.6433	40.5481	29.9915

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
O2A	CZ	ARG- 141	3.56	0	Ionic (Protein Cationic)	false
O2'	OG1	THR- 191	2.61	159.06	H-Bond (Protein Donor)	false
O2'	N	THR- 191	2.93	141.04	H-Bond (Protein Donor)	false
C1'	CB	THR- 191	4.15	0	Hydrophobic	false
N6	O	ALA- 196	2.67	165.84	H-Bond (Ligand Donor)	false
N1	N	ALA- 196	2.86	125.5	H-Bond (Protein Donor)	false
C1'	CG2	ILE- 216	4.41	0	Hydrophobic	false
C5'	CG2	ILE- 216	3.66	0	Hydrophobic	false
O1B	OG	SER- 217	2.76	153.58	H-Bond (Protein Donor)	false
O1B	NE	ARG- 290	2.77	156.52	H-Bond (Protein Donor)	false
O1B	CZ	ARG- 290	3.59	0	Ionic (Protein Cationic)	false
O3G	OG	SER- 305	2.55	168.59	H-Bond (Protein Donor)	false
C3'	CB	SER- 305	4.16	0	Hydrophobic	false
O3G	N	ALA- 307	2.95	147.79	H-Bond (Protein Donor)	false
O3'	OD1	ASP- 308	2.61	162.07	H-Bond (Ligand Donor)	false
O2'	OD2	ASP- 308	3.02	130.24	H-Bond (Ligand Donor)	false