2.330 Å
X-ray
2013-10-22
Name: | Phosphopantetheine adenylyltransferase |
---|---|
ID: | COAD_STAAW |
AC: | P63820 |
Organism: | Staphylococcus aureus |
Reign: | Bacteria |
TaxID: | 196620 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 3 % |
B | 97 % |
B-Factor: | 42.171 |
---|---|
Number of residues: | 37 |
Including | |
Standard Amino Acids: | 36 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.013 | 594.000 |
% Hydrophobic | % Polar |
---|---|
32.39 | 67.61 |
According to VolSite |
HET Code: | AGS |
---|---|
Formula: | C10H14N5O12P3S |
Molecular weight: | 521.231 g/mol |
DrugBank ID: | DB02930 |
Buried Surface Area: | 61.82 % |
Polar Surface area: | 329.24 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-15.9659 | -26.2873 | 41.6637 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | N | SER- 11 | 3.2 | 127.98 | H-Bond (Protein Donor) |
O2A | N | PHE- 12 | 2.89 | 165.92 | H-Bond (Protein Donor) |
O2A | NE2 | HIS- 19 | 3.35 | 123.32 | H-Bond (Protein Donor) |
O3' | N | GLY- 90 | 3.21 | 163.57 | H-Bond (Protein Donor) |
O2' | O | GLY- 90 | 2.87 | 154.52 | H-Bond (Ligand Donor) |
O2B | CZ | ARG- 92 | 3.26 | 0 | Ionic (Protein Cationic) |
N1 | OG | SER- 121 | 3.22 | 156.89 | H-Bond (Protein Donor) |
N6 | O | TYR- 125 | 2.89 | 151.26 | H-Bond (Ligand Donor) |
N6 | O | ILE- 128 | 3.16 | 127.5 | H-Bond (Ligand Donor) |
O3G | OG | SER- 129 | 3.34 | 128.85 | H-Bond (Protein Donor) |
O3G | N | SER- 131 | 2.7 | 159.13 | H-Bond (Protein Donor) |
O3' | O | HOH- 320 | 3.3 | 161.86 | H-Bond (Ligand Donor) |