sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3rs7 | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3rs7 | GNP | GTPase HRas | / | 1.241 | |
| 3rs4 | GNP | GTPase HRas | / | 1.238 | |
| 3rs5 | GNP | GTPase HRas | / | 1.237 | |
| 4dlz | GNP | GTPase HRas | / | 1.235 | |
| 4dlx | GNP | GTPase HRas | / | 1.234 | |
| 4dlt | GNP | GTPase HRas | / | 1.219 | |
| 4dlv | GNP | GTPase HRas | / | 1.219 | |
| 3rs0 | GNP | GTPase HRas | / | 1.218 | |
| 3rsl | GNP | GTPase HRas | / | 1.218 | |
| 4l9w | GNP | GTPase HRas | / | 1.217 | |
| 2rgc | GNP | GTPase HRas | / | 1.216 | |
| 3l8y | GNP | GTPase HRas | / | 1.216 | |
| 3lbn | GNP | GTPase HRas | / | 1.216 | |
| 3k8y | GNP | GTPase HRas | / | 1.215 | |
| 3i3s | GNP | GTPase HRas | / | 1.205 | |
| 4g0n | GNP | GTPase HRas | / | 1.204 | |
| 3v4f | GNP | GTPase HRas | / | 1.203 | |
| 4dlw | GNP | GTPase HRas | / | 1.202 | |
| 3oiw | GNP | GTPase HRas | / | 1.201 | |
| 5b2z | GNP | GTPase HRas | / | 1.201 | |
| 3lbi | GNP | GTPase HRas | / | 1.189 | |
| 3oiu | GNP | GTPase HRas | / | 1.185 | |
| 3lbh | GNP | GTPase HRas | / | 1.182 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.182 | |
| 3oiv | GNP | GTPase HRas | / | 1.181 | |
| 4dls | GNP | GTPase HRas | / | 1.181 | |
| 2rge | GNP | GTPase HRas | / | 1.176 | |
| 2rgb | GNP | GTPase HRas | / | 1.167 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.166 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.166 | |
| 2c5l | GTP | GTPase HRas | / | 1.162 | |
| 3ddc | GNP | GTPase HRas | / | 1.160 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.151 | |
| 4dsn | GCP | GTPase KRas | / | 1.149 | |
| 4nyj | GNP | GTPase HRas | / | 1.148 | |
| 4nyi | GNP | GTPase HRas | / | 1.128 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.125 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.121 | |
| 4k81 | GTP | GTPase HRas | / | 1.117 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.115 | |
| 3k9l | GNP | GTPase HRas | / | 1.112 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.109 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.101 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.090 | |
| 2rgg | GNP | GTPase HRas | / | 1.081 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.078 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.077 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.070 | |
| 4dso | GSP | GTPase KRas | / | 1.070 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.064 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.054 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.048 | |
| 3tgp | GNP | GTPase HRas | / | 1.045 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.042 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.040 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.035 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.033 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.032 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.031 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.031 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.029 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.024 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.017 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.017 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.016 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.015 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.009 | |
| 4xvq | GNP | GTPase HRas | / | 1.009 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.006 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.002 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.998 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.993 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.993 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.992 | |
| 4mit | GTP | Rho-related protein racC | / | 0.992 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.991 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.983 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.982 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.981 | |
| 3kud | GDP | GTPase HRas | / | 0.980 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.975 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.972 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.972 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.971 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.971 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.970 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.967 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.967 | |
| 2ce2 | GDP | GTPase HRas | / | 0.966 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.966 | |
| 4ql3 | GDP | GTPase KRas | / | 0.964 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.963 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.961 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.959 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.958 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.957 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.954 | |
| 2cl6 | CAG | GTPase HRas | / | 0.952 | |
| 4l9s | GDP | GTPase HRas | / | 0.951 | |
| 4wa7 | GDP | GTPase KRas | / | 0.949 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.948 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.947 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.945 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.943 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.943 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.937 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.936 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.936 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.935 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.934 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.932 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.929 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.929 | |
| 4epw | GDP | GTPase KRas | / | 0.929 | |
| 4tq9 | GDP | GTPase KRas | / | 0.929 | |
| 4q02 | GDP | GTPase KRas | / | 0.928 | |
| 4xvr | GNP | GTPase HRas | / | 0.926 | |
| 4epx | GDP | GTPase KRas | / | 0.924 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.924 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.923 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.923 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.922 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.921 | |
| 4l8g | GDP | GTPase KRas | / | 0.921 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.919 | |
| 1lfd | GNP | GTPase HRas | / | 0.918 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.918 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.916 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.916 | |
| 4q03 | GDP | GTPase KRas | / | 0.915 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.914 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.914 | |
| 4dvg | GSP | Rho family GTPase | / | 0.914 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.912 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.912 | |
| 3r9x | GNP | GTPase Era | / | 0.909 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.908 | |
| 4dsu | GDP | GTPase KRas | / | 0.907 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.902 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.901 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.900 | |
| 4ldj | GDP | GTPase KRas | / | 0.894 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.894 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.887 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.887 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.885 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.884 | |
| 4lv6 | GDP | GTPase KRas | / | 0.884 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.882 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.881 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.878 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.877 | |
| 4lpk | GDP | GTPase KRas | / | 0.876 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.874 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.874 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.871 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.869 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.868 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.867 | |
| 4luc | GDP | GTPase KRas | / | 0.864 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.863 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.863 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.861 | |
| 3ftq | GNP | Septin-2 | / | 0.860 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.860 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.857 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.856 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.856 | |
| 4lrw | GDP | GTPase KRas | / | 0.855 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.854 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.853 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.852 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.852 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.852 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.852 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.847 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.845 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.845 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.844 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.840 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.840 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.838 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.837 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.837 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.835 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.834 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.830 | |
| 3ref | GDP | Rho family GTPase | / | 0.829 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.828 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.827 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.826 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.824 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.824 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.823 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.822 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.822 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.821 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.817 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.816 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.816 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.815 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.814 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.814 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.814 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.813 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.811 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.809 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.809 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.809 | |
| 5bn3 | ADP | NEQ263 | / | 0.809 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.804 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.803 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.798 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.796 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.795 | |
| 4db1 | ANP | Myosin-7 | / | 0.795 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.795 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.794 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.794 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.793 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.793 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.793 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.792 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.790 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.788 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.785 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.783 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.783 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.783 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.783 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.782 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.781 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.781 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.780 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.779 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.777 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.773 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.772 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.772 | |
| 2fna | ADP | Uncharacterized protein | / | 0.770 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.769 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.769 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.769 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.769 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.769 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.768 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.768 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.767 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.766 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.765 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.762 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.762 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.762 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.757 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.757 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.756 | |
| 1ank | ANP | Adenylate kinase | / | 0.755 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.754 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.754 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.754 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.753 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.753 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.752 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.752 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.751 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.751 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.751 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.751 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.751 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.751 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.750 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.750 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.749 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.749 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.749 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.747 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.745 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.741 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.741 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.740 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.739 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.739 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.738 | |
| 1xms | ANP | Protein RecA | / | 0.737 | |
| 4v02 | ATP | Site-determining protein | / | 0.737 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.736 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.736 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.735 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.735 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.734 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.734 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.734 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.734 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.734 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.733 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.732 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.732 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.732 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.731 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.731 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.730 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.729 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.728 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.725 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.725 | |
| 1xmv | ADP | Protein RecA | / | 0.725 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 2zts | ADP | Uncharacterized protein | / | 0.725 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.725 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.722 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.722 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.722 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.721 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.721 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.721 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.720 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.719 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.719 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.719 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.718 | |
| 4jlo | ADP | Adenylate kinase | / | 0.718 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.717 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.716 | |
| 4yqf | GDP | Septin-9 | / | 0.716 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.714 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.714 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.714 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.714 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.713 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.712 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.711 | |
| 5cyo | GDP | Septin-9 | / | 0.711 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.710 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.708 | |
| 1nly | AGS | Cag alpha | / | 0.706 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.706 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.705 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.704 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.704 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.704 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.703 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.703 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.702 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.702 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.702 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.700 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.699 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.699 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.699 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.699 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.698 | |
| 4c30 | ANP | DNA helicase | / | 0.698 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.697 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.697 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.697 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.696 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.693 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.691 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.691 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.691 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.690 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.690 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.689 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.689 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.689 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.689 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.687 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.687 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.686 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.686 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.685 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.684 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.684 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.683 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.681 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.681 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.681 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.681 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.680 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.678 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.676 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.675 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.674 | |
| 4e2x | TYD | Methyltransferase | / | 0.674 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.673 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.673 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.671 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.670 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.669 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.668 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.668 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.668 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.667 | |
| 4lfg | IPE | Putative geranyltranstransferase | / | 0.667 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.666 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.666 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.666 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.666 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.665 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.665 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.664 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.664 | |
| 2zrj | AGS | Protein RecA | / | 0.663 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.663 | |
| 2eck | ADP | Adenylate kinase | / | 0.662 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.661 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.660 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.660 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.660 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.660 | |
| 4tv9 | GTP | Tubulin alpha-1B chain | / | 0.659 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.658 | |
| 4xvu | ATP | ATPase GET3 | / | 0.658 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.657 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.654 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.653 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.653 | |
| 1dvr | ATF | Adenylate kinase | / | 0.652 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.650 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.650 |