sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3bc1 | GNP | Ras-related protein Rab-27A |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.259 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.172 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.167 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.152 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.140 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.136 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 1.135 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.124 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.118 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.107 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.088 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.077 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.072 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.068 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.067 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.050 | |
| 3oiv | GNP | GTPase HRas | / | 1.050 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.047 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.045 | |
| 4dlz | GNP | GTPase HRas | / | 1.040 | |
| 2rge | GNP | GTPase HRas | / | 1.038 | |
| 3i3s | GNP | GTPase HRas | / | 1.038 | |
| 3rs4 | GNP | GTPase HRas | / | 1.038 | |
| 3k8y | GNP | GTPase HRas | / | 1.036 | |
| 3lbi | GNP | GTPase HRas | / | 1.035 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.035 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.035 | |
| 3ddc | GNP | GTPase HRas | / | 1.032 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.032 | |
| 3oiw | GNP | GTPase HRas | / | 1.031 | |
| 4l9w | GNP | GTPase HRas | / | 1.030 | |
| 4dlx | GNP | GTPase HRas | / | 1.028 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.026 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 1.024 | |
| 5b2z | GNP | GTPase HRas | / | 1.024 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.020 | |
| 4nyi | GNP | GTPase HRas | / | 1.019 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.018 | |
| 3rs7 | GNP | GTPase HRas | / | 1.017 | |
| 3rs5 | GNP | GTPase HRas | / | 1.016 | |
| 4xvq | GNP | GTPase HRas | / | 1.015 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.013 | |
| 2rgb | GNP | GTPase HRas | / | 1.012 | |
| 4dlt | GNP | GTPase HRas | / | 1.012 | |
| 3rs0 | GNP | GTPase HRas | / | 1.009 | |
| 3rsl | GNP | GTPase HRas | / | 1.008 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 1.007 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.006 | |
| 4dso | GSP | GTPase KRas | / | 1.003 | |
| 2c5l | GTP | GTPase HRas | / | 1.002 | |
| 3lbh | GNP | GTPase HRas | / | 1.002 | |
| 4g0n | GNP | GTPase HRas | / | 1.002 | |
| 4nyj | GNP | GTPase HRas | / | 1.002 | |
| 2rgc | GNP | GTPase HRas | / | 0.998 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.996 | |
| 4dlw | GNP | GTPase HRas | / | 0.994 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.993 | |
| 3lbn | GNP | GTPase HRas | / | 0.992 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.986 | |
| 2rgg | GNP | GTPase HRas | / | 0.985 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.983 | |
| 4dls | GNP | GTPase HRas | / | 0.981 | |
| 4dlv | GNP | GTPase HRas | / | 0.981 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.979 | |
| 3oiu | GNP | GTPase HRas | / | 0.978 | |
| 3v4f | GNP | GTPase HRas | / | 0.978 | |
| 4dsn | GCP | GTPase KRas | / | 0.978 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.976 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.972 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.971 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.971 | |
| 4k81 | GTP | GTPase HRas | / | 0.971 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.969 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.962 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.962 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.959 | |
| 2cl6 | CAG | GTPase HRas | / | 0.958 | |
| 3k9l | GNP | GTPase HRas | / | 0.958 | |
| 4xvr | GNP | GTPase HRas | / | 0.958 | |
| 3l8y | GNP | GTPase HRas | / | 0.953 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.952 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.947 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.937 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.936 | |
| 3tgp | GNP | GTPase HRas | / | 0.935 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.934 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.933 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.933 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.933 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.932 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.931 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.931 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.927 | |
| 4mit | GTP | Rho-related protein racC | / | 0.927 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.924 | |
| 4wa7 | GDP | GTPase KRas | / | 0.923 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.922 | |
| 4q02 | GDP | GTPase KRas | / | 0.922 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.920 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.920 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.919 | |
| 4dsu | GDP | GTPase KRas | / | 0.918 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.917 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.917 | |
| 1lfd | GNP | GTPase HRas | / | 0.914 | |
| 3r9x | GNP | GTPase Era | / | 0.914 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.913 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.910 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.909 | |
| 4ql3 | GDP | GTPase KRas | / | 0.909 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.908 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.907 | |
| 4epw | GDP | GTPase KRas | / | 0.904 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.902 | |
| 4lv6 | GDP | GTPase KRas | / | 0.901 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.898 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.898 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.896 | |
| 4dvg | GSP | Rho family GTPase | / | 0.895 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.895 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.895 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.894 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.894 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.893 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.893 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.892 | |
| 2ce2 | GDP | GTPase HRas | / | 0.891 | |
| 4q03 | GDP | GTPase KRas | / | 0.891 | |
| 4epx | GDP | GTPase KRas | / | 0.888 | |
| 4l9s | GDP | GTPase HRas | / | 0.888 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.885 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.884 | |
| 4tq9 | GDP | GTPase KRas | / | 0.884 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.876 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.875 | |
| 4l8g | GDP | GTPase KRas | / | 0.875 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.874 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.872 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.870 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.869 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.868 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.867 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.867 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.867 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.866 | |
| 3kud | GDP | GTPase HRas | / | 0.865 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.861 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.857 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.856 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.855 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.852 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.851 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.850 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.848 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.848 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.848 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.846 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.846 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.842 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.840 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.839 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.836 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.835 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.835 | |
| 3ref | GDP | Rho family GTPase | / | 0.834 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.833 | |
| 4ldj | GDP | GTPase KRas | / | 0.833 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.832 | |
| 4lrw | GDP | GTPase KRas | / | 0.832 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.831 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.831 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.831 | |
| 4db1 | ANP | Myosin-7 | / | 0.830 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.829 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.825 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.825 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.821 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.821 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.821 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.820 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.820 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.819 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.818 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.817 | |
| 3ftq | GNP | Septin-2 | / | 0.817 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.817 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.814 | |
| 4lpk | GDP | GTPase KRas | / | 0.813 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.811 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.807 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.805 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.803 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.803 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.802 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.801 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.801 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.799 | |
| 4luc | GDP | GTPase KRas | / | 0.795 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.789 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.788 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.788 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.787 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.787 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.786 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.786 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.786 | |
| 4obe | GDP | GTPase KRas | / | 0.786 | |
| 4v02 | ATP | Site-determining protein | / | 0.786 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.783 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.783 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.783 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.781 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.781 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.778 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.777 | |
| 5bn3 | ADP | NEQ263 | / | 0.777 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.776 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.776 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.775 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.774 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.774 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.774 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.773 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.771 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.771 | |
| 2fna | ADP | Uncharacterized protein | / | 0.769 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.769 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.769 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.767 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.767 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.765 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.765 | |
| 4jlo | ADP | Adenylate kinase | / | 0.765 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.765 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.764 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.763 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.763 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.762 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.760 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.759 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.759 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.757 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.755 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.751 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.751 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.750 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.750 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.748 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.748 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.747 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.747 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.747 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.747 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.746 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.746 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.746 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.746 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.745 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.745 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.745 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.743 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.743 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.743 | |
| 5cyo | GDP | Septin-9 | / | 0.743 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.743 | |
| 1ank | ANP | Adenylate kinase | / | 0.742 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.742 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.741 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.740 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.737 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.737 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.735 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.735 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.734 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.734 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.734 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.733 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.732 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.732 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.731 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.731 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.730 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.730 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.730 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.728 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.728 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.727 | |
| 4yqf | GDP | Septin-9 | / | 0.727 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.725 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.723 | |
| 2zts | ADP | Uncharacterized protein | / | 0.722 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.721 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.721 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.719 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.719 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.719 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.719 | |
| 5ftc | ADP | TPR domain protein | / | 0.719 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.718 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.717 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.716 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.716 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.716 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.716 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.714 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.713 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.712 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.712 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.712 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.711 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.711 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.710 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.710 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.710 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.709 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.707 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.706 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.706 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.705 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.705 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.704 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.704 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.703 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.700 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.700 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.699 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.699 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.698 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.697 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.695 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.694 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.694 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.694 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.694 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.693 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.693 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.693 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.693 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.692 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.692 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.692 | |
| 4c30 | ANP | DNA helicase | / | 0.692 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.691 | |
| 2eck | ADP | Adenylate kinase | / | 0.691 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.691 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.691 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.691 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.689 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.687 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.686 | |
| 4ohw | ATP | Protein clpf-1 | / | 0.686 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.685 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.685 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.685 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.685 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.685 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.684 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.682 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.682 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.681 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.681 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.681 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.680 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.680 | |
| 1h8h | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.678 | |
| 1h8h | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.678 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.678 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.678 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.677 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.677 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.677 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.676 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.675 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.675 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.674 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.674 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.674 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.674 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.673 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.673 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.673 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.673 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.672 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.670 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.670 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.670 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.670 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.670 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.670 | |
| 4jld | ADP | Adenylate kinase | / | 0.670 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.668 | |
| 4xvu | ATP | ATPase GET3 | / | 0.668 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.667 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.667 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.666 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.666 | |
| 2xul | ATP | Nitrogen regulatory protein P-II | / | 0.666 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.666 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.666 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.665 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.665 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.664 | |
| 4jky | ADP | Adenylate kinase | / | 0.664 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.663 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.662 | |
| 2qaj | AP5 | Adenylate kinase | / | 0.662 | |
| 4mkg | AP5 | Adenylate kinase | / | 0.662 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.661 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.661 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.661 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.660 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.660 | |
| 3dkv | AP5 | Adenylate kinase | / | 0.660 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.659 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.659 | |
| 4w5j | AP5 | Adenylate kinase | / | 0.659 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.658 | |
| 4nu0 | AP5 | Adenylate kinase | / | 0.658 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.656 | |
| 3l1c | ADP | Protein claret segregational | / | 0.656 | |
| 4bn1 | ADP | Aurora kinase A | 2.7.11.1 | 0.656 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.655 | |
| 1s4o | GDP | Glycolipid 2-alpha-mannosyltransferase | / | 0.655 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.655 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.655 | |
| 4n9w | GDP | Phosphatidyl-myo-inositol mannosyltransferase | 2.4.1.57 | 0.655 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.654 | |
| 2q9c | GNP | Signal recognition particle receptor FtsY | / | 0.654 | |
| 4aff | ATP | Nitrogen regulatory protein P-II | / | 0.653 | |
| 4oav | ACP | 2-5A-dependent ribonuclease | 3.1.26 | 0.653 | |
| 2eu8 | AP5 | Adenylate kinase | / | 0.652 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.652 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.652 | |
| 5dac | AGS | Uncharacterized protein | / | 0.652 | |
| 1s4p | GDP | Glycolipid 2-alpha-mannosyltransferase | / | 0.651 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.651 | |
| 3r7w | GNP | GTP-binding protein GTR2 | / | 0.651 |