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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2duxZSTAldose reductase1.1.1.21

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
2duxZSTAldose reductase1.1.1.211.000
2duzZSTAldose reductase1.1.1.210.806
2i17LDTAldose reductase1.1.1.210.768
3ghtLDTAldose reductase1.1.1.210.747
3ld5LDTAldose reductase1.1.1.210.747
2pdg47DAldose reductase1.1.1.210.734
1z3n3NAAldose reductase1.1.1.210.719
3ghsLDTAldose reductase1.1.1.210.716
2hvoZSTAldose reductase1.1.1.210.707
3g5eQ74Aldose reductase1.1.1.210.700
3ghrLDTAldose reductase1.1.1.210.700
3ghuLDTAldose reductase1.1.1.210.699
3m4h388Aldose reductase1.1.1.210.699
1t40ID5Aldose reductase1.1.1.210.698
4yu153NAldose reductase1.1.1.210.695
2i16LDTAldose reductase1.1.1.210.685
3lboLDTAldose reductase1.1.1.210.685
2qxwLDTAldose reductase1.1.1.210.677
3lqlLDTAldose reductase1.1.1.210.671
3mb9ZSTAldose reductase1.1.1.210.671
1pwlBFIAldose reductase1.1.1.210.669
4gca2X9Aldose reductase1.1.1.210.657
3lenZSTAldose reductase1.1.1.210.651
1t41ID5Aldose reductase1.1.1.210.649
1us0LDTAldose reductase1.1.1.210.648
2pdn47DAldose reductase1.1.1.210.647
2pdp393Aldose reductase1.1.1.210.647
2pzn393Aldose reductase1.1.1.210.647
2pdxZSTAldose reductase1.1.1.210.642
2iki388Aldose reductase1.1.1.210.641
2pdc393Aldose reductase1.1.1.210.625
3t423T4Aldose reductase1.1.1.210.624
2pd5ZSTAldose reductase1.1.1.210.621
2pdh47DAldose reductase1.1.1.210.620
2pdu393Aldose reductase1.1.1.210.619
2pdbZSTAldose reductase1.1.1.210.618
3m64393Aldose reductase1.1.1.210.618
3m0iZSTAldose reductase1.1.1.210.610
2pdfZSTAldose reductase1.1.1.210.608
2dv0ZSTAldose reductase1.1.1.210.606
3mc5393Aldose reductase1.1.1.210.603
1z8962PAldose reductase1.1.1.210.600
2fz8ZSTAldose reductase1.1.1.210.597
2pdq47DAldose reductase1.1.1.210.596
2ikj393Aldose reductase1.1.1.210.595
2hv5ZSTAldose reductase1.1.1.210.593
1frbZSTAldose reductase-related protein 2/0.591
2ikhLITAldose reductase1.1.1.210.589
2pdj393Aldose reductase1.1.1.210.583
2fz9ZSTAldose reductase1.1.1.210.581
1ah3TOLAldose reductase1.1.1.210.570
1el3I84Aldose reductase1.1.1.210.569
3lz5LDTAldose reductase1.1.1.210.565
1ieiZESAldose reductase1.1.1.210.561
2pdlTOLAldose reductase1.1.1.210.554
2fzdTOLAldose reductase1.1.1.210.538
2fzbTOLAldose reductase1.1.1.210.510
5liu388Aldo-keto reductase family 1 member B101.1.10.509
2jf0HBPAcetylcholinesterase3.1.1.70.492
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.491
4kn104JFolate receptor beta/0.491
2agtFIDAldose reductase1.1.1.210.490
2xujTZ5Acetylcholinesterase3.1.1.70.489
3wavDWVEctonucleotide pyrophosphatase/phosphodiesterase family member 23.1.4.390.489
4kmzFOLFolate receptor beta/0.488
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.486
3ghvGHCDihydrofolate reductase1.5.1.30.483
4dbw511Aldo-keto reductase family 1 member C3/0.483
3mjrAC2Deoxycytidine kinase2.7.1.740.481
2vt4P32Beta-1 adrenergic receptor/0.480
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.479
2xufTZ4Acetylcholinesterase3.1.1.70.478
3sl6JN8cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.478
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.478
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.477
4kn2LYAFolate receptor beta/0.477
4wevSUZAldo-keto reductase family 1 member B101.1.10.477
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.476
2cbqTH2Neocarzinostatin/0.474
8catNDPCatalase1.11.1.60.474
3k4s0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.473
3nubUD0UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase2.6.1.980.473
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.472
2f3815MAldo-keto reductase family 1 member C3/0.472
1oynROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.471
1gpnHUBAcetylcholinesterase3.1.1.70.470
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.470
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.470
2cekN8TAcetylcholinesterase3.1.1.70.469
4phlPILPhosphodiesterase/0.469
2iqdLPAAldose reductase1.1.1.210.468
2v0mKLNCytochrome P450 3A4/0.468
3hxeBD8Geranylgeranyl transferase type-2 subunit beta2.5.1.600.467
3g1rNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.466
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.466
3szfDCQSulfide-quinone reductase/0.466
3tvxPNXcAMP-specific 3',5'-cyclic phosphodiesterase 4A3.1.4.530.466
2xupTZ5Acetylcholinesterase3.1.1.70.465
3u2cSUZAldose reductase1.1.1.210.465
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.465
4mvh2F5cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.465
1o5rFR9Adenosine deaminase3.5.4.40.464
1ro6ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.464
2pd9FIDAldose reductase1.1.1.210.464
2w6cBM4Acetylcholinesterase3.1.1.70.464
3kegMREFMN-dependent NADH-azoreductase 1/0.464
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.464
4ey7E20Acetylcholinesterase3.1.1.70.464
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.463
1h35R01Squalene--hopene cyclase4.2.1.1290.463
1xf0ASDAldo-keto reductase family 1 member C3/0.463
4fam0SZAldo-keto reductase family 1 member C3/0.463
4li61XOTankyrase-12.4.2.300.463
1ry0PG2Aldo-keto reductase family 1 member C3/0.462
1zgcA2EAcetylcholinesterase3.1.1.70.462
2f2kTGGAldose reductase1.1.1.210.462
2weyEV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.462
3aivHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic3.2.1.1820.462
3g58988cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.462
3t0kDCQSulfide-quinone reductase/0.462
1p91SAM23S rRNA (guanine(745)-N(1))-methyltransferase/0.461
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.461
4pabTHGDimethylglycine dehydrogenase, mitochondrial1.5.8.40.461
1s1rNAPAldo-keto reductase family 1 member C3/0.460
2bjsACVIsopenicillin N synthase1.21.3.10.460
1e66HUXAcetylcholinesterase3.1.1.70.459
1gt5BZQOdorant-binding protein/0.459
3iakEV1cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.459
3n0hTOPDihydrofolate reductase1.5.1.30.459
1ah0SBIAldose reductase1.1.1.210.458
1ihiIU5Aldo-keto reductase family 1 member C2/0.458
2o8h227cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.458
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.458
3g4lROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
4araC56Acetylcholinesterase3.1.1.70.458
4dbuBT9Aldo-keto reductase family 1 member C3/0.458
4u163C0Muscarinic acetylcholine receptor M3/0.458
2c1zU2FAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.457
2is72CLAldose reductase1.1.1.210.457
2xi4AFTAcetylcholinesterase3.1.1.70.457
3c3xNAPEugenol synthase 11.1.1.3180.457
4kn0MTXFolate receptor beta/0.457
4m0f1YKAcetylcholinesterase3.1.1.70.457
1xonPILcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.456
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.456
3uzzTES3-oxo-5-beta-steroid 4-dehydrogenase/0.456
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.456
1pj6FOLDimethylglycine oxidase1.5.3.100.455
1qv0CZHObelin/0.455
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.455
1y2k7DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.455
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.455
2xjeU5PCytosolic purine 5'-nucleotidase3.1.3.50.455
3hxdBD7Geranylgeranyl transferase type-2 subunit beta2.5.1.600.455
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.455
3v35NTIAldose reductase1.1.1.210.455
4ajm3A6cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.455
4muw2F4cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.455
4pnmNU1Tankyrase-22.4.2.300.455
1xorZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.454
1y2e5DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.454
1zuaTOLAldo-keto reductase family 1 member B101.1.10.454
2xuhTZ4Acetylcholinesterase3.1.1.70.454
3f3y4OABile salt sulfotransferase2.8.2.140.454
3zj6VM2Raucaffricine-O-beta-D-glucosidase3.2.1.1250.454
4lrhFOLFolate receptor alpha/0.454
4x3uSVRChromobox protein homolog 7/0.454
1s36CEIObelin/0.453
2fm0M98cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.453
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.453
3uzxAOM3-oxo-5-beta-steroid 4-dehydrogenase/0.453
3zv7NHGAcetylcholinesterase3.1.1.70.453
4e0u0MVCyclic dipeptide N-prenyltransferase/0.453
4heu15JcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.453
4k4eK4ETankyrase-12.4.2.300.453
2psjCEIRenilla-luciferin 2-monooxygenase1.13.12.50.452
3r58NPSAldo-keto reductase family 1 member C3/0.452
4i9z5BAcGMP-specific 3',5'-cyclic phosphodiesterase/0.452
4mm729JNa(+):neurotransmitter symporter (Snf family)/0.452
4mrxCZHObelin/0.452
1tfz8694-hydroxyphenylpyruvate dioxygenase1.13.11.270.451
1y2bDEEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.451
1zgbA1EAcetylcholinesterase3.1.1.70.451
2c1zKMPAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.451
2vcmM11Isopenicillin N synthase1.21.3.10.451
4bjcRPBTankyrase-22.4.2.300.451
1uhjCZBAequorin-2/0.450
1y2d4DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.450
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.450
3r8hZOMAldo-keto reductase family 1 member C3/0.450
4bj9UHBTankyrase-22.4.2.300.450
4bjbP34Tankyrase-22.4.2.300.450
4dz5NAPAldo-keto reductase family 1 member C3/0.450
1pqc444Oxysterols receptor LXR-beta/0.449
1u65CP0Acetylcholinesterase3.1.1.70.449
2ea4F79Methionine aminopeptidase 2/0.449
2nmtMIMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.449
2pdyFIDAldose reductase1.1.1.210.449
3g4kROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.449
3jq8DX3Pteridine reductase, putative/0.449
4bftZVTPantothenate kinase2.7.1.330.449
4ga8SBIAldo-keto reductase family 1 member B101.1.10.449
1ah4NAPAldose reductase1.1.1.210.448
1hqtNAPAlcohol dehydrogenase [NADP(+)]1.1.1.20.448
1pwmFIDAldose reductase1.1.1.210.448
1tkcM6TTransketolase 12.2.1.10.448
1zklIBMHigh affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A3.1.4.530.448
1zknIBMcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.448
2aot2PMHistamine N-methyltransferase2.1.1.80.448
2inzOHPAldose reductase1.1.1.210.448
2qryTPSThiamine-binding periplasmic protein/0.448
3b82NADExotoxin A2.4.2.360.448
3fapARDPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.448
3fapARDSerine/threonine-protein kinase mTOR2.7.11.10.448
3gx9TXDMorphinone reductase/0.448
3hggCHDCmeR/0.448
3qppPFWcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.448
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.448
4ey6GNTAcetylcholinesterase3.1.1.70.448
4gts7TPGeranylgeranyl transferase type-2 subunit beta2.5.1.600.448
1ekoI84Aldose reductase1.1.1.210.447
1ro98BRcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.447
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.447
2fzjDH3Dihydrofolate reductase1.5.1.30.447
2xuiTZ5Acetylcholinesterase3.1.1.70.447
3dopNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.447
3fvuIACKynurenine--oxoglutarate transaminase 12.6.1.70.447
3u57DH8Raucaffricine-O-beta-D-glucosidase3.2.1.1250.447
3vf60H6Glucokinase2.7.1.20.447
4c1iEH9cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.447
4fl0PLPAminotransferase ALD1, chloroplastic2.6.10.447
4lm4JPZcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.447
5stdUNNScytalone dehydratase4.2.1.940.447
5cxv0HKMuscarinic acetylcholine receptor M1/0.447
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.446
1pj7FFODimethylglycine oxidase1.5.3.100.446
1v08NTZ4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic3.2.1.1820.446
2d06ESTSulfotransferase 1A12.8.2.10.446
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.446
3h7rNAPAldo-keto reductase family 4 member C8/0.446
3q9bB3NAcetylpolyamine amidohydrolase/0.446
3qpoPFRcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.446
4bfxZVXPantothenate kinase2.7.1.330.446
4d2dALA_ALA_ALADi-or tripeptide:H+ symporter/0.446
4gvsF4MMethenyltetrahydromethanopterin cyclohydrolase3.5.4.270.446
4kxjP34Nucleoprotein/0.446
4u95MIYMultidrug efflux pump subunit AcrB/0.446
1az2NAPAldose reductase1.1.1.210.445
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.445
1udtVIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.445
2gyuHI6Acetylcholinesterase3.1.1.70.445
2qjpANJCytochrome b/0.445
3aosJH2Hemolymph juvenile hormone binding protein/0.445
3bv7NAP3-oxo-5-beta-steroid 4-dehydrogenase/0.445
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.445
3qpnPFKcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.445
3r43ID8Aldo-keto reductase family 1 member C3/0.445
3x04GNPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.445
4q7f3D1Uncharacterized protein/0.445
5c1gGDUHisto-blood group ABO system transferase/0.445
1dgbNDPCatalase1.11.1.60.444
1ni4TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.444
1ni4TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.444
1u08PLPMethionine aminotransferase/0.444
1ut6A8NAcetylcholinesterase3.1.1.70.444
1w6jR71Lanosterol synthase5.4.99.70.444
2ckmAA7Acetylcholinesterase3.1.1.70.444
2gywOBIAcetylcholinesterase3.1.1.70.444
2pdiZSTAldose reductase1.1.1.210.444
2y0jAXCcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.444
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.444
4b7zQ4QAcetylcholinesterase3.1.1.70.444
2poqISDTrans-1,2-dihydrobenzene-1,2-diol dehydrogenase1.3.1.200.443
2qimZEAClass 10 plant pathogenesis-related protein/0.443
3caqNDP3-oxo-5-beta-steroid 4-dehydrogenase/0.443
4kak06UDihydrofolate reductase1.5.1.30.443
4kfjFOLDihydrofolate reductase1.5.1.30.443
1a26CNAPoly [ADP-ribose] polymerase 12.4.2.300.442
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.442
1ndyFR3Adenosine deaminase3.5.4.40.442
1o6qR17Squalene--hopene cyclase4.2.1.1290.442
2gmsP0PPutative pyridoxamine 5-phosphate-dependent dehydrase/0.442
2ouyCMPcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
2vbpVB1Isopenicillin N synthase1.21.3.10.442
3aiqHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1b, chloroplastic3.2.1.1820.442
3casASD3-oxo-5-beta-steroid 4-dehydrogenase/0.442
3o57ZG2cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.442
3ug8IMNAldo-keto reductase family 1 member C3/0.442
3v36NAPAldose reductase1.1.1.210.442
4ajdF04cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
2yczI32Beta-1 adrenergic receptor/0.442
1dtpAPUDiphtheria toxin/0.441
1gg5E09NAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1kmyBPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.441
1w4lGL8Acetylcholinesterase3.1.1.70.441
2b04CHOPhospholipase A2, major isoenzyme3.1.1.40.441
2j9fTHV2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial1.2.4.40.441
2j9fTHV2-oxoisovalerate dehydrogenase subunit beta, mitochondrial1.2.4.40.441
2y1w849Histone-arginine methyltransferase CARM1/0.441
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441
3k4551PDihydrofolate reductase1.5.1.30.441
3ocw3AMLipoprotein E/0.441
3r8gIZPAldo-keto reductase family 1 member C3/0.441
3uweVJJAldo-keto reductase family 1 member C3/0.441
3wd2A1LChitinase B3.2.1.140.441
4a4xJUPSerine/threonine-protein kinase Nek22.7.11.10.441
4fa30SLAldo-keto reductase family 1 member C3/0.441
4i5xFLFAldo-keto reductase family 1 member B101.1.10.441
4jq1NPSAldo-keto reductase family 1 member C2/0.441
1odcA8BAcetylcholinesterase3.1.1.70.440
2hzqSTRApolipoprotein D/0.440
2ovyPFJcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.440
2xukTZ5Acetylcholinesterase3.1.1.70.440
3biz61EWee1-like protein kinase2.7.10.20.440
3v94WYQPhosphodiesterase/0.440
3zj7C1KStrictosidine-O-beta-D-glucosidase3.2.1.1050.440
4lsaBLDProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.440
4n65FMNFMN-dependent NADH-azoreductase 1/0.440
5cc9DDFDihydrofolate reductase1.5.1.30.440