2.000 Å
X-ray
2001-12-17
Name: | Biphenyl-2,3-diol 1,2-dioxygenase |
---|---|
ID: | BPHC_BURXL |
AC: | P47228 |
Organism: | Burkholderia xenovorans |
Reign: | Bacteria |
TaxID: | 266265 |
EC Number: | 1.13.11.39 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 18.082 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | FE2 |
Ligandability | Volume (Å3) |
---|---|
0.808 | 398.250 |
% Hydrophobic | % Polar |
---|---|
59.32 | 40.68 |
According to VolSite |
HET Code: | BPY |
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Formula: | C12H10O2 |
Molecular weight: | 186.207 g/mol |
DrugBank ID: | DB02923 |
Buried Surface Area: | 73.56 % |
Polar Surface area: | 40.46 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
22.4927 | -22.5686 | 72.4227 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CK8 | CG2 | VAL- 148 | 4.16 | 0 | Hydrophobic |
CK6 | CD1 | ILE- 173 | 3.84 | 0 | Hydrophobic |
CKA | CE | MET- 175 | 3.8 | 0 | Hydrophobic |
DuAr | DuAr | HIS- 241 | 3.48 | 0 | Aromatic Face/Face |
CK5 | CB | HIS- 241 | 3.93 | 0 | Hydrophobic |
OK2 | OH | TYR- 250 | 2.75 | 154.57 | H-Bond (Protein Donor) |
CK1 | CB | PRO- 280 | 3.93 | 0 | Hydrophobic |
OK1 | FE | FE2- 500 | 2.35 | 0 | Metal Acceptor |
OK2 | FE | FE2- 500 | 1.98 | 0 | Metal Acceptor |