2.000 Å
X-ray
2001-12-17
| Name: | Biphenyl-2,3-diol 1,2-dioxygenase |
|---|---|
| ID: | BPHC_BURXL |
| AC: | P47228 |
| Organism: | Burkholderia xenovorans |
| Reign: | Bacteria |
| TaxID: | 266265 |
| EC Number: | 1.13.11.39 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 18.082 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | FE2 |
| Ligandability | Volume (Å3) |
|---|---|
| 0.808 | 398.250 |
| % Hydrophobic | % Polar |
|---|---|
| 59.32 | 40.68 |
| According to VolSite | |

| HET Code: | BPY |
|---|---|
| Formula: | C12H10O2 |
| Molecular weight: | 186.207 g/mol |
| DrugBank ID: | DB02923 |
| Buried Surface Area: | 73.56 % |
| Polar Surface area: | 40.46 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 22.4927 | -22.5686 | 72.4227 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CK8 | CG2 | VAL- 148 | 4.16 | 0 | Hydrophobic |
| CK6 | CD1 | ILE- 173 | 3.84 | 0 | Hydrophobic |
| CKA | CE | MET- 175 | 3.8 | 0 | Hydrophobic |
| DuAr | DuAr | HIS- 241 | 3.48 | 0 | Aromatic Face/Face |
| CK5 | CB | HIS- 241 | 3.93 | 0 | Hydrophobic |
| OK2 | OH | TYR- 250 | 2.75 | 154.57 | H-Bond (Protein Donor) |
| CK1 | CB | PRO- 280 | 3.93 | 0 | Hydrophobic |
| OK1 | FE | FE2- 500 | 2.35 | 0 | Metal Acceptor |
| OK2 | FE | FE2- 500 | 1.98 | 0 | Metal Acceptor |