2.250 Å
X-ray
1998-01-16
Name: | Poly [ADP-ribose] polymerase 1 |
---|---|
ID: | PARP1_CHICK |
AC: | P26446 |
Organism: | Gallus gallus |
Reign: | Eukaryota |
TaxID: | 9031 |
EC Number: | 2.4.2.30 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 44.017 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 22 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.825 | 837.000 |
% Hydrophobic | % Polar |
---|---|
43.95 | 56.05 |
According to VolSite |
HET Code: | CNA |
---|---|
Formula: | C22H28N7O13P2 |
Molecular weight: | 660.444 g/mol |
DrugBank ID: | DB02498 |
Buried Surface Area: | 42.89 % |
Polar Surface area: | 334.31 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
36.2627 | 16.0725 | 23.5562 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1N | O | HOH- 19 | 2.94 | 179.97 | H-Bond (Protein Donor) |
O2N | NE2 | HIS- 826 | 2.78 | 152.89 | H-Bond (Protein Donor) |
C2B | SD | MET- 890 | 3.63 | 0 | Hydrophobic |
O1A | NZ | LYS- 903 | 2.6 | 154.33 | H-Bond (Protein Donor) |
O5B | NZ | LYS- 903 | 3.3 | 133.38 | H-Bond (Protein Donor) |
O1A | NZ | LYS- 903 | 2.6 | 0 | Ionic (Protein Cationic) |
C5B | CD2 | LEU- 984 | 4.19 | 0 | Hydrophobic |
C3B | CD2 | LEU- 984 | 4.49 | 0 | Hydrophobic |
O2A | N | LEU- 985 | 2.73 | 170.14 | H-Bond (Protein Donor) |
O1A | N | TYR- 986 | 2.95 | 134.3 | H-Bond (Protein Donor) |
O3B | OE1 | GLU- 988 | 2.67 | 152.99 | H-Bond (Ligand Donor) |