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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

1a26

2.250 Å

X-ray

1998-01-16

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Poly [ADP-ribose] polymerase 1
ID:PARP1_CHICK
AC:P26446
Organism:Gallus gallus
Reign:Eukaryota
TaxID:9031
EC Number:2.4.2.30


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:44.017
Number of residues:24
Including
Standard Amino Acids: 22
Non Standard Amino Acids: 0
Water Molecules: 2
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.825837.000

% Hydrophobic% Polar
43.9556.05
According to VolSite

Ligand :
1a26_1 Structure
HET Code: CNA
Formula: C22H28N7O13P2
Molecular weight: 660.444 g/mol
DrugBank ID: DB02498
Buried Surface Area:42.89 %
Polar Surface area: 334.31 Å2
Number of
H-Bond Acceptors: 17
H-Bond Donors: 6
Rings: 5
Aromatic rings: 3
Anionic atoms: 2
Cationic atoms: 1
Rule of Five Violation: 3
Rotatable Bonds: 11

Mass center Coordinates

XYZ
36.262716.072523.5562


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
O1NOHOH- 192.94179.97H-Bond
(Protein Donor)
O2NNE2HIS- 8262.78152.89H-Bond
(Protein Donor)
C2BSDMET- 8903.630Hydrophobic
O1ANZLYS- 9032.6154.33H-Bond
(Protein Donor)
O5BNZLYS- 9033.3133.38H-Bond
(Protein Donor)
O1ANZLYS- 9032.60Ionic
(Protein Cationic)
C5BCD2LEU- 9844.190Hydrophobic
C3BCD2LEU- 9844.490Hydrophobic
O2ANLEU- 9852.73170.14H-Bond
(Protein Donor)
O1ANTYR- 9862.95134.3H-Bond
(Protein Donor)
O3BOE1GLU- 9882.67152.99H-Bond
(Ligand Donor)