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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1oh0EQUSteroid Delta-isomerase5.3.3.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
1oh0EQUSteroid Delta-isomerase5.3.3.11.000
1e3vDXCSteroid Delta-isomerase5.3.3.10.673
1w6yEQUSteroid Delta-isomerase5.3.3.10.627
1e3rANDSteroid Delta-isomerase5.3.3.10.588
1cqsEQUSteroid Delta-isomerase5.3.3.10.569
3owsEQUSteroid Delta-isomerase5.3.3.10.554
1ogxEQUSteroid Delta-isomerase5.3.3.10.552
3fzwEQUSteroid Delta-isomerase5.3.3.10.550
3nhxASDSteroid Delta-isomerase5.3.3.10.550
3owyEQUSteroid Delta-isomerase5.3.3.10.534
1gs3EQUSteroid Delta-isomerase5.3.3.10.522
1ohoEQUSteroid Delta-isomerase5.3.3.10.513
4iyg1HUStrictosidine synthase4.3.3.20.508
1zklIBMHigh affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A3.1.4.530.503
4oicA8SBet v I allergen-like/0.502
3vgnFNNSteroid Delta-isomerase5.3.3.10.501
3iptEQUSteroid Delta-isomerase5.3.3.10.500
2fpcSCGStrictosidine synthase4.3.3.20.496
4k9yK9YFocal adhesion kinase 12.7.10.20.493
3k47D09Dihydrofolate reductase1.5.1.30.492
3njoP2MAbscisic acid receptor PYR1/0.490
3nmnPYVAbscisic acid receptor PYL1/0.489
3pp1IZGDual specificity mitogen-activated protein kinase kinase 12.7.12.20.489
3ujlA8SAbscisic acid receptor PYL2/0.488
4jrvKJVEpidermal growth factor receptor2.7.10.10.488
3kb0A8SAbscisic acid receptor PYL2/0.487
4ds8A8SAbscisic acid receptor PYL3/0.487
3kb3A8SAbscisic acid receptor PYL2/0.479
3kdiA8SAbscisic acid receptor PYL2/0.479
4mm729JNa(+):neurotransmitter symporter (Snf family)/0.479
1qjgEQUSteroid Delta-isomerase5.3.3.10.478
3zk5Z18Cytochrome P450 monooxygenase PikC/0.478
3nefPYVAbscisic acid receptor PYL1/0.476
3ov4EQUSteroid Delta-isomerase5.3.3.10.476
3btjDEQHTH-type transcriptional regulator QacR/0.475
3nmhPYVAbscisic acid receptor PYL2/0.475
3qly55VUncharacterized protein/0.475
3t5iSER_SER_CMT_FARRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.475
2f6rACOBifunctional coenzyme A synthase/0.474
3njoPYVAbscisic acid receptor PYR1/0.474
3roeTHMNAD(P)H-hydrate epimerase5.1.99.60.474
4dscA8SAbscisic acid receptor PYL3/0.474
4qemHC4Phospholipase A2 VRV-PL-VIIIa/0.474
3k3kA8SAbscisic acid receptor PYR1/0.473
3nmpPYVAbscisic acid receptor PYL2/0.472
3zvuA8SAbscisic acid receptor PYR1/0.472
1jumBERHTH-type transcriptional regulator QacR/0.470
3v1s0LHStrictosidine synthase4.3.3.20.470
3bgpVX1Serine/threonine-protein kinase pim-12.7.11.10.469
2cd8PXICytochrome P450 monooxygenase PikC/0.468
2ewaSB2Mitogen-activated protein kinase 14/0.468
2ydoADNAdenosine receptor A2a/0.468
2wkmPFYHepatocyte growth factor receptor2.7.10.10.467
2bl9CP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.466
2v9jATP5'-AMP-activated protein kinase subunit gamma-1/0.466
2zazGK1Mitogen-activated protein kinase 14/0.466
3m8cEQUSteroid Delta-isomerase5.3.3.10.466
3nj0PYVAbscisic acid receptor PYL2/0.466
4fgcPQ0NADPH-dependent 7-cyano-7-deazaguanine reductase1.7.1.130.466
2blcCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.464
3l8sBFFMitogen-activated protein kinase 14/0.464
3lfeZ84Mitogen-activated protein kinase 14/0.464
3qakUKAAdenosine receptor A2a/0.464
1jt6DEQHTH-type transcriptional regulator QacR/0.463
1yqdNAPSinapyl alcohol dehydrogenase/0.463
2f4jVX6Tyrosine-protein kinase ABL12.7.10.20.463
3lfcZ86Mitogen-activated protein kinase 14/0.463
4bchT7ZCyclin-dependent kinase 92.7.11.220.463
5c6cCMPcGMP-dependent protein kinase 22.7.11.120.463
1dg5TOPDihydrofolate reductase1.5.1.30.461
1pd8CO4Dihydrofolate reductase1.5.1.30.461
3bfa9ODOdorant binding protein ASP1/0.461
4h9506UDihydrofolate reductase1.5.1.30.461
1yhoTRRDihydrofolate reductase1.5.1.30.460
3h03UBPGlutamate receptor 2/0.459
3kdjA8SAbscisic acid receptor PYL1/0.459
4lgaA2OAbscisic acid receptor PYL2/0.459
1kv2B96Mitogen-activated protein kinase 14/0.458
1m7qDQOMitogen-activated protein kinase 14/0.458
2eauCZASarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.458
3fzpAGSProtein-tyrosine kinase 2-beta2.7.10.20.458
3k90A8SAbscisic acid receptor PYR1/0.458
3p5kP5KMitogen-activated protein kinase 14/0.458
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.458
3v8w0G2Tyrosine-protein kinase ITK/TSK2.7.10.20.458
4iarERM5-hydroxytryptamine receptor 1B/0.458
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.457
2w3aTOPDihydrofolate reductase1.5.1.30.457
3n0tOPYDipeptidyl peptidase 23.4.14.20.457
4pb1RBVNucleoside permease/0.457
4trj665Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.457
1zarADPRIO-type serine/threonine-protein kinase Rio22.7.11.10.456
3anlNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase1.1.1.2670.456
3gxoMQAMitomycin biosynthesis 6-O-methyltransferase/0.456
3h3sH15Collagen type IV alpha-3-binding protein/0.456
4kfj1R0Dihydrofolate reductase1.5.1.30.456
4mm9FVXNa(+):neurotransmitter symporter (Snf family)/0.456
4mvh2F5cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.456
1ai9NDPDihydrofolate reductase1.5.1.30.455
1th6OINBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.455
4hvb19PPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.455
4jdaA9SAbscisic acid receptor PYL3/0.455
1w84L12Mitogen-activated protein kinase 14/0.454
2ouzC3DEstrogen receptor/0.454
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.454
3tijURINucleoside permease/0.454
4lg5A1OAbscisic acid receptor PYL2/0.454
4n702HXSerine/threonine-protein kinase pim-12.7.11.10.454
1eqbFFOSerine hydroxymethyltransferase2.1.2.10.453
1ne6SP1cAMP-dependent protein kinase type I-alpha regulatory subunit/0.453
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.453
3ar4TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.453
3cyz9ODPheromone-binding protein ASP1/0.453
3fp0FP015-O-acetyltransferase/0.453
3juqAKDPhenazine biosynthesis protein A/B/0.453
3m4nPA9N-acetylornithine carbamoyltransferase2.1.3.90.453
3p78P78Mitogen-activated protein kinase 14/0.453
3qj5022Alcohol dehydrogenase class-31.1.1.10.453
4hw764MMacrophage colony-stimulating factor 1 receptor2.7.10.10.453
4k181OBSerine/threonine-protein kinase pim-12.7.11.10.453
1tg2H2BPhenylalanine-4-hydroxylase1.14.16.10.452
2b5vNAPGlucose 1-dehydrogenase/0.452
2blbCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.452
2vssACOHydroxycinnamoyl-CoA hydratase-lyase4.1.2.410.452
3bgqVX2Serine/threonine-protein kinase pim-12.7.11.10.452
3ituIBMcGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.452
1dr3HBIDihydrofolate reductase1.5.1.30.451
1xu9CPSCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.451
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.451
1yqj6NPMitogen-activated protein kinase 14/0.451
2blaCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.451
2pnjCHDFerrochelatase, mitochondrial4.99.1.10.451
3ojiPYVAbscisic acid receptor PYL3/0.451
3owuEQUSteroid Delta-isomerase5.3.3.10.451
3w1wCHDFerrochelatase, mitochondrial4.99.1.10.451
4pdaCTNNucleoside permease/0.451
3reyXACAdenosine receptor A2a/0.451
1hfpMOTDihydrofolate reductase1.5.1.30.450
2itqITQEpidermal growth factor receptor2.7.10.10.450
3bgzVX3Serine/threonine-protein kinase pim-12.7.11.10.450
3nr4PYVAbscisic acid receptor PYL2/0.450
3rgaLSBEpoxide hydrolase LasB5.5.10.450
3vf9477Tyrosine-protein kinase SYK2.7.10.20.450
4jhz1KVBeta-glucuronidase3.2.1.310.450
5d12G97Proto-oncogene tyrosine-protein kinase Src2.7.10.20.450
1klkPMDDihydrofolate reductase1.5.1.30.449
1m17AQ4Epidermal growth factor receptor2.7.10.10.449
2xvv9DNSerum albumin/0.449
3ctj320Hepatocyte growth factor receptor2.7.10.10.449
3dg8RJ6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.449
3qn1A8SAbscisic acid receptor PYR1/0.449
3qpnPFKcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.449
4gg50J3Hepatocyte growth factor receptor2.7.10.10.449
4h4uNDPBiphenyl dioxygenase ferredoxin reductase subunit/0.449
4n6hEJ4Delta-type opioid receptor/0.449
4pd5GEONucleoside permease/0.449
4rtmSAMDNA adenine methylase2.1.1.720.449
1bl7SB4Mitogen-activated protein kinase 14/0.448
1hfqMOTDihydrofolate reductase1.5.1.30.448
1lhvNOGSex hormone-binding globulin/0.448
3dgaRJ1Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.448
3hv71AUMitogen-activated protein kinase 14/0.448
3koo24DBifunctional epoxide hydrolase 23.3.2.100.448
3tm4SAMUncharacterized protein/0.448
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.448
4nm9FADBifunctional protein PutA/0.448
4nmbFADBifunctional protein PutA/0.448
4pb25UDNucleoside permease/0.448
4qa1B3NHistone deacetylase 83.5.1.980.448
5c1mCLRMu-type opioid receptor/0.448
5i2hAGIO-methyltransferase family 2/0.448
3uzcT4EAdenosine receptor A2a/0.448
1ouy094Mitogen-activated protein kinase 14/0.447
2fzhDH1Dihydrofolate reductase1.5.1.30.447
2ociTYCValacyclovir hydrolase3.10.447
2oyfIACBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.447
2w3vTOPDihydrofolate reductase/0.447
3fnu006HAP protein/0.447
3g5qFADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO/0.447
3gluLYS_VAL_METNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.447
3nmvPYVAbscisic acid receptor PYL2/0.447
3pre3REPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.447
3r6pA8SAbscisic acid receptor PYL10/0.447
3sgy06WDihydrofolate reductase1.5.1.30.447
3v04V04Dual specificity mitogen-activated protein kinase kinase 12.7.12.20.447
3vrwYS5Vitamin D3 receptor/0.447
4dtk7LISerine/threonine-protein kinase pim-12.7.11.10.447
4hfnCIY2-alkenal reductase (NADP(+)-dependent)/0.447
1ci7UMPThymidylate synthase2.1.1.450.446
1gky5GPGuanylate kinase2.7.4.80.446
1kmvLIIDihydrofolate reductase1.5.1.30.446
1yolS03Proto-oncogene tyrosine-protein kinase Src2.7.10.20.446
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.446
2qgtEEDEstrogen receptor/0.446
3c4eC4ESerine/threonine-protein kinase pim-12.7.11.10.446
3cseN22Uncharacterized protein/0.446
4h9753SDihydrofolate reductase1.5.1.30.446
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.446
1dr3TAPDihydrofolate reductase1.5.1.30.445
1v0pPVBCell division control protein 2 homolog2.7.11.220.445
1xonPILcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
2ohjFMNType A flavoprotein FprA10.445
3d74NBBPheromone-binding protein ASP1/0.445
3qg2CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.445
4dsbA8SAbscisic acid receptor PYL3/0.445
4f640S8Fibroblast growth factor receptor 1/0.445
4h9614QDihydrofolate reductase1.5.1.30.445
4iaq2GM5-hydroxytryptamine receptor 1B/0.445
4jq8KJ8Epidermal growth factor receptor2.7.10.10.445
4l7sG7KTyrosine-protein kinase ITK/TSK2.7.10.20.445
5ajqDB8Serine/threonine-protein kinase 102.7.11.10.445
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.445
1mc5AHEAlcohol dehydrogenase class-31.1.1.10.444
1txiTX5Vitamin D3 receptor/0.444
1x7jGENEstrogen receptor beta/0.444
2apcUDMAlpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase2.4.1.1010.444
3dcv55ESerine/threonine-protein kinase pim-12.7.11.10.444
3juqAJDPhenazine biosynthesis protein A/B/0.444
3q2mCKISpectinomycin phosphotransferase/0.444
4asg814ATP-dependent molecular chaperone HSP82/0.444
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.444
4g090VDHistidinol dehydrogenase/0.444
4g34924Eukaryotic translation initiation factor 2-alpha kinase 32.7.11.10.444
4i41MIXSerine/threonine-protein kinase pim-12.7.11.10.444
1d2sDHTSex hormone-binding globulin/0.443
1fd0254Retinoic acid receptor gamma/0.443
1t02LVA3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.880.443
2fzjDH3Dihydrofolate reductase1.5.1.30.443
2jc6QPPCalcium/calmodulin-dependent protein kinase type 1D2.7.11.170.443
2puiADPMethylthioribose kinase2.7.1.1000.443
3e8eG98cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
3frfXCFDihydrofolate reductase1.5.1.30.443
3gi3B10Mitogen-activated protein kinase 14/0.443
3jwm5WBDihydrofolate reductase/0.443
3k145352-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/0.443
3ns2PYVAbscisic acid receptor PYL2/0.443
4aacAAVMitogen-activated protein kinase 14/0.443
4au7SAHHistone-lysine N-methyltransferase KMT5C2.1.1.430.443
4bb5HD2Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.443
4g1z0VPVitamin D3 receptor A/0.443
5iubCLRAdenosine receptor A2a/0.443
1l2jETCEstrogen receptor beta/0.442
1td2PXLPyridoxal kinase PdxY/0.442
2fziDH3Dihydrofolate reductase1.5.1.30.442
2g1pSAHDNA adenine methylase2.1.1.720.442
2qd3CHDFerrochelatase, mitochondrial4.99.1.10.442
2zbaZBATrichothecene 3-O-acetyltransferase/0.442
2zsbADPPantothenate kinase2.7.1.330.442
3fgoACPSarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.442
3hf6LX0Tryptophan 5-hydroxylase 11.14.16.40.442
3kpzZNEVitamin D3 receptor/0.442
3p9tTCLRepressor/0.442
3qppPFWcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
3vruYS3Vitamin D3 receptor/0.442
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.442
4c9pCAMCytochrome P450/0.442
4g1y0VOVitamin D3 receptor A/0.442
4h1j0YHProtein-tyrosine kinase 2-beta2.7.10.20.442
4iskUMPThymidylate synthase/0.442
4kbn25UDihydrofolate reductase1.5.1.30.442
4l17DNQGlutamate receptor 2/0.442
5k2cZMAAdenosine receptor A2a/0.442
1k7fIAVTryptophan synthase alpha chain/0.441
1kl2FONSerine hydroxymethyltransferase/0.441
1oriSAHProtein arginine N-methyltransferase 1/0.441
1s3wTQTDihydrofolate reductase1.5.1.30.441
1xqcAEJEstrogen receptor/0.441
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441
2b365PPEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
2qe4JJ3Estrogen receptor/0.441
2zcePYLPyrrolysine--tRNA ligase/0.441
3deyDHTEstradiol 17-beta-dehydrogenase 11.1.1.620.441
3klmDHTEstradiol 17-beta-dehydrogenase 11.1.1.620.441
3oafOAGDihydrofolate reductase1.5.1.30.441
3qyw6PBMitogen-activated protein kinase 12.7.11.240.441
3swrSFGDNA (cytosine-5)-methyltransferase 12.1.1.370.441
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.441
4ap1NAPSteroid monooxygenase/0.441
4ddl0JQcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
4fewPP2Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.441
4mmc29JNa(+):neurotransmitter symporter (Snf family)/0.441
4rtjSFGDNA adenine methylase2.1.1.720.441
4tx9AMZPhosphoribosyl isomerase A/0.441
1ouk084Mitogen-activated protein kinase 14/0.440
1sm2STUTyrosine-protein kinase ITK/TSK2.7.10.20.440
1yi3LY2Serine/threonine-protein kinase pim-12.7.11.10.440
2gu8796cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440
2jedLG8Protein kinase C theta type2.7.11.130.440
2ow3BIMGlycogen synthase kinase-3 beta2.7.11.260.440
2x7gPVBSRSF protein kinase 22.7.11.10.440
2zwvSAHProbable ribosomal RNA small subunit methyltransferase/0.440
3fwfCAMCamphor 5-monooxygenase1.14.15.10.440
3fywXCFDihydrofolate reductase1.5.1.30.440
3gcq1BUMitogen-activated protein kinase 14/0.440
3l71AZOCytochrome b/0.440
3w5tLHPVitamin D3 receptor/0.440
4ap7F47Hepatocyte growth factor receptor2.7.10.10.440
4g210VPVitamin D3 receptor A/0.440
4iw8KN3Estrogen receptor/0.440
4jr3KJREpidermal growth factor receptor2.7.10.10.440
4kd79DRDihydrofolate reductase1.5.1.30.440
4nks2M2Fibroblast growth factor receptor 1/0.440
4qa0SHHHistone deacetylase 83.5.1.980.440