2.580 Å
X-ray
2008-06-13
Name: | Bifunctional dihydrofolate reductase-thymidylate synthase |
---|---|
ID: | DRTS_PLAFK |
AC: | P13922 |
Organism: | Plasmodium falciparum |
Reign: | Eukaryota |
TaxID: | 5839 |
EC Number: | 1.5.1.3 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 71.221 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | NDP |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.048 | 654.750 |
% Hydrophobic | % Polar |
---|---|
56.19 | 43.81 |
According to VolSite |
HET Code: | RJ6 |
---|---|
Formula: | C10H17N5O2 |
Molecular weight: | 239.274 g/mol |
DrugBank ID: | DB08479 |
Buried Surface Area: | 67.88 % |
Polar Surface area: | 119.72 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 5 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 2 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
30.2205 | -30.2017 | 6.76888 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4 | CD2 | LEU- 46 | 4.41 | 0 | Hydrophobic |
C10 | CG | LEU- 46 | 3.32 | 0 | Hydrophobic |
N17 | OD2 | ASP- 54 | 3.17 | 123.36 | H-Bond (Ligand Donor) |
N17 | OD1 | ASP- 54 | 3.1 | 143.36 | H-Bond (Ligand Donor) |
C8 | CZ | PHE- 58 | 4.28 | 0 | Hydrophobic |
C8 | SD | MET- 104 | 3.78 | 0 | Hydrophobic |
C1 | CD1 | ILE- 112 | 4.36 | 0 | Hydrophobic |
C2 | CG1 | ILE- 112 | 4.11 | 0 | Hydrophobic |
C8 | CD1 | ILE- 112 | 3.66 | 0 | Hydrophobic |
C8 | CD1 | LEU- 119 | 3.48 | 0 | Hydrophobic |
C8 | CD1 | LEU- 164 | 3.36 | 0 | Hydrophobic |
C10 | C2D | NDP- 610 | 3.96 | 0 | Hydrophobic |