1.550 Å
X-ray
2016-02-08
| Name: | O-methyltransferase family 2 |
|---|---|
| ID: | D5STZ7_PLAL2 |
| AC: | D5STZ7 |
| Organism: | Planctopirus limnophila |
| Reign: | Bacteria |
| TaxID: | 521674 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 12 % |
| B | 88 % |
| B-Factor: | 16.486 |
|---|---|
| Number of residues: | 17 |
| Including | |
| Standard Amino Acids: | 16 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.195 | 840.375 |
| % Hydrophobic | % Polar |
|---|---|
| 58.23 | 41.77 |
| According to VolSite | |

| HET Code: | AGI |
|---|---|
| Formula: | C15H9O5 |
| Molecular weight: | 269.229 g/mol |
| DrugBank ID: | DB07352 |
| Buried Surface Area: | 52.07 % |
| Polar Surface area: | 89.82 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| 42.2858 | 42.6781 | 42.6779 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAG | CD1 | LEU- 158 | 3.88 | 0 | Hydrophobic |
| CAH | CD2 | LEU- 158 | 3.72 | 0 | Hydrophobic |
| CAK | CD2 | LEU- 162 | 3.92 | 0 | Hydrophobic |
| CAT | CD1 | LEU- 162 | 3.98 | 0 | Hydrophobic |
| OAC | NH1 | ARG- 165 | 2.85 | 143.39 | H-Bond (Protein Donor) |
| OAC | NH2 | ARG- 165 | 3.46 | 124.78 | H-Bond (Protein Donor) |
| OAD | NE2 | HIS- 270 | 2.57 | 152.48 | H-Bond (Protein Donor) |
| OAA | OD2 | ASP- 271 | 2.64 | 126.34 | H-Bond (Protein Donor) |
| CAI | CD2 | LEU- 318 | 4.02 | 0 | Hydrophobic |
| CAH | CB | LEU- 321 | 4.31 | 0 | Hydrophobic |
| CAG | CD1 | LEU- 321 | 3.83 | 0 | Hydrophobic |
| CAE | CD2 | LEU- 321 | 3.94 | 0 | Hydrophobic |