3.000 Å
X-ray
2015-08-03
| Name: | Proto-oncogene tyrosine-protein kinase Src |
|---|---|
| ID: | SRC_CHICK |
| AC: | P00523 |
| Organism: | Gallus gallus |
| Reign: | Eukaryota |
| TaxID: | 9031 |
| EC Number: | 2.7.10.2 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 39.821 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.086 | 796.500 |
| % Hydrophobic | % Polar |
|---|---|
| 47.88 | 52.12 |
| According to VolSite | |

| HET Code: | G97 |
|---|---|
| Formula: | C20H16N6O |
| Molecular weight: | 356.381 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 42.76 % |
| Polar Surface area: | 95.59 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 3 |
| Rings: | 4 |
| Aromatic rings: | 4 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| -10.2184 | 38.9086 | -2.34448 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAM | CB | LEU- 273 | 4.49 | 0 | Hydrophobic |
| C5 | CD2 | LEU- 273 | 4.14 | 0 | Hydrophobic |
| CAF | CB | VAL- 281 | 4.08 | 0 | Hydrophobic |
| CAD | CG2 | VAL- 281 | 4.12 | 0 | Hydrophobic |
| CAW | CG1 | VAL- 281 | 3.9 | 0 | Hydrophobic |
| NAS | O | GLU- 339 | 3.42 | 140.26 | H-Bond (Ligand Donor) |
| NAR | O | MET- 341 | 2.78 | 136.37 | H-Bond (Ligand Donor) |
| NAN | N | MET- 341 | 2.7 | 149.74 | H-Bond (Protein Donor) |
| CAH | CD1 | LEU- 393 | 4.46 | 0 | Hydrophobic |