3.000 Å
X-ray
2015-08-03
Name: | Proto-oncogene tyrosine-protein kinase Src |
---|---|
ID: | SRC_CHICK |
AC: | P00523 |
Organism: | Gallus gallus |
Reign: | Eukaryota |
TaxID: | 9031 |
EC Number: | 2.7.10.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 39.821 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.086 | 796.500 |
% Hydrophobic | % Polar |
---|---|
47.88 | 52.12 |
According to VolSite |
HET Code: | G97 |
---|---|
Formula: | C20H16N6O |
Molecular weight: | 356.381 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 42.76 % |
Polar Surface area: | 95.59 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 3 |
Rings: | 4 |
Aromatic rings: | 4 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
-10.2184 | 38.9086 | -2.34448 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAM | CB | LEU- 273 | 4.49 | 0 | Hydrophobic |
C5 | CD2 | LEU- 273 | 4.14 | 0 | Hydrophobic |
CAF | CB | VAL- 281 | 4.08 | 0 | Hydrophobic |
CAD | CG2 | VAL- 281 | 4.12 | 0 | Hydrophobic |
CAW | CG1 | VAL- 281 | 3.9 | 0 | Hydrophobic |
NAS | O | GLU- 339 | 3.42 | 140.26 | H-Bond (Ligand Donor) |
NAR | O | MET- 341 | 2.78 | 136.37 | H-Bond (Ligand Donor) |
NAN | N | MET- 341 | 2.7 | 149.74 | H-Bond (Protein Donor) |
CAH | CD1 | LEU- 393 | 4.46 | 0 | Hydrophobic |