2.300 Å
X-ray
2009-04-02
Name: | Mitomycin biosynthesis 6-O-methyltransferase |
---|---|
ID: | MMCR_STRLA |
AC: | Q9X5T6 |
Organism: | Streptomyces lavendulae |
Reign: | Bacteria |
TaxID: | 1914 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 9 % |
D | 91 % |
B-Factor: | 35.617 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.409 | 941.625 |
% Hydrophobic | % Polar |
---|---|
54.84 | 45.16 |
According to VolSite |
HET Code: | MQA |
---|---|
Formula: | C16H20N3O6 |
Molecular weight: | 350.346 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.24 % |
Polar Surface area: | 124.77 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 2 |
Rings: | 4 |
Aromatic rings: | 0 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
33.0388 | 4.41084 | 48.195 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3 | CE2 | PHE- 113 | 3.8 | 0 | Hydrophobic |
CM6 | CE2 | PHE- 145 | 4.19 | 0 | Hydrophobic |
CM6 | CE1 | PHE- 159 | 3.59 | 0 | Hydrophobic |
C3 | CB | ALA- 162 | 4.46 | 0 | Hydrophobic |
N2 | O | ALA- 162 | 3.21 | 152.08 | H-Bond (Ligand Donor) |
C10 | SD | MET- 163 | 3.93 | 0 | Hydrophobic |
C24 | SD | MET- 163 | 3.93 | 0 | Hydrophobic |
C10 | CG2 | VAL- 166 | 4.17 | 0 | Hydrophobic |
C24 | CB | HIS- 256 | 4.23 | 0 | Hydrophobic |
O7 | OD1 | ASP- 260 | 2.82 | 154.34 | H-Bond (Protein Donor) |
C25 | CG2 | VAL- 301 | 3.74 | 0 | Hydrophobic |
CM6 | CD1 | LEU- 308 | 4.23 | 0 | Hydrophobic |