2.300 Å
X-ray
2009-04-02
| Name: | Mitomycin biosynthesis 6-O-methyltransferase |
|---|---|
| ID: | MMCR_STRLA |
| AC: | Q9X5T6 |
| Organism: | Streptomyces lavendulae |
| Reign: | Bacteria |
| TaxID: | 1914 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 9 % |
| D | 91 % |
| B-Factor: | 35.617 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.409 | 941.625 |
| % Hydrophobic | % Polar |
|---|---|
| 54.84 | 45.16 |
| According to VolSite | |

| HET Code: | MQA |
|---|---|
| Formula: | C16H20N3O6 |
| Molecular weight: | 350.346 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 66.24 % |
| Polar Surface area: | 124.77 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 2 |
| Rings: | 4 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 33.0388 | 4.41084 | 48.195 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3 | CE2 | PHE- 113 | 3.8 | 0 | Hydrophobic |
| CM6 | CE2 | PHE- 145 | 4.19 | 0 | Hydrophobic |
| CM6 | CE1 | PHE- 159 | 3.59 | 0 | Hydrophobic |
| C3 | CB | ALA- 162 | 4.46 | 0 | Hydrophobic |
| N2 | O | ALA- 162 | 3.21 | 152.08 | H-Bond (Ligand Donor) |
| C10 | SD | MET- 163 | 3.93 | 0 | Hydrophobic |
| C24 | SD | MET- 163 | 3.93 | 0 | Hydrophobic |
| C10 | CG2 | VAL- 166 | 4.17 | 0 | Hydrophobic |
| C24 | CB | HIS- 256 | 4.23 | 0 | Hydrophobic |
| O7 | OD1 | ASP- 260 | 2.82 | 154.34 | H-Bond (Protein Donor) |
| C25 | CG2 | VAL- 301 | 3.74 | 0 | Hydrophobic |
| CM6 | CD1 | LEU- 308 | 4.23 | 0 | Hydrophobic |