1.980 Å
X-ray
2012-05-30
Name: | Aminoglycoside 3'-phosphotransferase AphA1-IAB |
---|---|
ID: | B0VD92_ACIBY |
AC: | B0VD92 |
Organism: | Acinetobacter baumannii |
Reign: | Bacteria |
TaxID: | 509173 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 96 % |
B | 4 % |
B-Factor: | 36.787 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.921 | 1272.375 |
% Hydrophobic | % Polar |
---|---|
29.44 | 70.56 |
According to VolSite |
HET Code: | PP2 |
---|---|
Formula: | C15H16ClN5 |
Molecular weight: | 301.774 g/mol |
DrugBank ID: | DB03023 |
Buried Surface Area: | 57.55 % |
Polar Surface area: | 69.62 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-21.2856 | -29.2373 | -18.1016 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C23 | CG2 | ILE- 40 | 4.26 | 0 | Hydrophobic |
C24 | CD1 | ILE- 40 | 3.46 | 0 | Hydrophobic |
C23 | CB | PHE- 53 | 3.47 | 0 | Hydrophobic |
C6 | CE2 | PHE- 53 | 3.36 | 0 | Hydrophobic |
N4 | N | ILE- 101 | 2.95 | 167.23 | H-Bond (Protein Donor) |
N25 | O | ILE- 101 | 2.98 | 158.23 | H-Bond (Ligand Donor) |
CL | CG2 | THR- 105 | 4.37 | 0 | Hydrophobic |
C14 | CG2 | THR- 105 | 4.2 | 0 | Hydrophobic |
C12 | CD1 | ILE- 205 | 4.28 | 0 | Hydrophobic |
C6 | CD1 | ILE- 215 | 3.71 | 0 | Hydrophobic |
C11 | CD1 | ILE- 215 | 4.16 | 0 | Hydrophobic |
C25 | CB | ILE- 215 | 4.09 | 0 | Hydrophobic |