1.980 Å
X-ray
2012-05-30
| Name: | Aminoglycoside 3'-phosphotransferase AphA1-IAB |
|---|---|
| ID: | B0VD92_ACIBY |
| AC: | B0VD92 |
| Organism: | Acinetobacter baumannii |
| Reign: | Bacteria |
| TaxID: | 509173 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 96 % |
| B | 4 % |
| B-Factor: | 36.787 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.921 | 1272.375 |
| % Hydrophobic | % Polar |
|---|---|
| 29.44 | 70.56 |
| According to VolSite | |

| HET Code: | PP2 |
|---|---|
| Formula: | C15H16ClN5 |
| Molecular weight: | 301.774 g/mol |
| DrugBank ID: | DB03023 |
| Buried Surface Area: | 57.55 % |
| Polar Surface area: | 69.62 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 1 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -21.2856 | -29.2373 | -18.1016 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C23 | CG2 | ILE- 40 | 4.26 | 0 | Hydrophobic |
| C24 | CD1 | ILE- 40 | 3.46 | 0 | Hydrophobic |
| C23 | CB | PHE- 53 | 3.47 | 0 | Hydrophobic |
| C6 | CE2 | PHE- 53 | 3.36 | 0 | Hydrophobic |
| N4 | N | ILE- 101 | 2.95 | 167.23 | H-Bond (Protein Donor) |
| N25 | O | ILE- 101 | 2.98 | 158.23 | H-Bond (Ligand Donor) |
| CL | CG2 | THR- 105 | 4.37 | 0 | Hydrophobic |
| C14 | CG2 | THR- 105 | 4.2 | 0 | Hydrophobic |
| C12 | CD1 | ILE- 205 | 4.28 | 0 | Hydrophobic |
| C6 | CD1 | ILE- 215 | 3.71 | 0 | Hydrophobic |
| C11 | CD1 | ILE- 215 | 4.16 | 0 | Hydrophobic |
| C25 | CB | ILE- 215 | 4.09 | 0 | Hydrophobic |