1.800 Å
X-ray
2008-04-27
Name: | Pheromone-binding protein ASP1 |
---|---|
ID: | Q9U9J6_APIME |
AC: | Q9U9J6 |
Organism: | Apis mellifera |
Reign: | Eukaryota |
TaxID: | 7460 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 20.032 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.830 | 766.125 |
% Hydrophobic | % Polar |
---|---|
71.81 | 28.19 |
According to VolSite |
HET Code: | 9OD |
---|---|
Formula: | C10H15O3 |
Molecular weight: | 183.224 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 61.08 % |
Polar Surface area: | 57.2 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 0 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
27.5997 | -15.8218 | -20.4906 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
OE1 | NZ | LYS- 17 | 3.88 | 0 | Ionic (Protein Cationic) |
OE2 | NZ | LYS- 17 | 3.77 | 0 | Ionic (Protein Cationic) |
OE1 | OH | TYR- 48 | 2.84 | 176.41 | H-Bond (Protein Donor) |
C7 | CE | MET- 49 | 3.38 | 0 | Hydrophobic |
C4 | CD2 | LEU- 52 | 4.12 | 0 | Hydrophobic |
C10 | CD1 | LEU- 53 | 4.49 | 0 | Hydrophobic |
C6 | CD2 | LEU- 53 | 4.44 | 0 | Hydrophobic |
C10 | CG2 | ILE- 101 | 4.25 | 0 | Hydrophobic |
C10 | CG | LEU- 104 | 3.5 | 0 | Hydrophobic |
C10 | CB | ALA- 105 | 3.38 | 0 | Hydrophobic |
C7 | CB | ALA- 105 | 3.99 | 0 | Hydrophobic |
C4 | CD1 | ILE- 119 | 4.42 | 0 | Hydrophobic |