2.900 Å
X-ray
2010-12-20
Name: | Spectinomycin phosphotransferase |
---|---|
ID: | O06916_LEGPN |
AC: | O06916 |
Organism: | Legionella pneumophila |
Reign: | Bacteria |
TaxID: | 446 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 56.388 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.091 | 543.375 |
% Hydrophobic | % Polar |
---|---|
63.35 | 36.65 |
According to VolSite |
HET Code: | CKI |
---|---|
Formula: | C11H13ClN3O2S |
Molecular weight: | 286.758 g/mol |
DrugBank ID: | DB03693 |
Buried Surface Area: | 52.79 % |
Polar Surface area: | 95.07 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
-0.728833 | 26.5011 | 34.6647 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4 | CB | PHE- 50 | 4.04 | 0 | Hydrophobic |
CL5 | CE1 | PHE- 50 | 4.05 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 50 | 3.81 | 0 | Aromatic Face/Face |
C4 | CD1 | ILE- 78 | 3.61 | 0 | Hydrophobic |
N2 | N | ILE- 103 | 2.8 | 144.77 | H-Bond (Protein Donor) |
N2' | O | ALA- 105 | 3.42 | 121.27 | H-Bond (Ligand Donor) |
C9 | CD1 | LEU- 219 | 4.5 | 0 | Hydrophobic |
CL5 | CB | ILE- 229 | 3.98 | 0 | Hydrophobic |
C6 | CD1 | ILE- 229 | 3.76 | 0 | Hydrophobic |