2.110 Å
X-ray
2011-04-25
| Name: | NAD(P)H-hydrate epimerase |
|---|---|
| ID: | NNRE_MOUSE |
| AC: | Q8K4Z3 |
| Organism: | Mus musculus |
| Reign: | Eukaryota |
| TaxID: | 10090 |
| EC Number: | 5.1.99.6 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 51.014 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.567 | 661.500 |
| % Hydrophobic | % Polar |
|---|---|
| 47.45 | 52.55 |
| According to VolSite | |

| HET Code: | THM |
|---|---|
| Formula: | C10H14N2O5 |
| Molecular weight: | 242.229 g/mol |
| DrugBank ID: | DB04485 |
| Buried Surface Area: | 69.16 % |
| Polar Surface area: | 99.1 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -1.01294 | 24.9963 | 78.2961 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5M | CB | ALA- 35 | 4.24 | 0 | Hydrophobic |
| C5M | CG1 | VAL- 38 | 3.62 | 0 | Hydrophobic |
| C5M | CB | ASP- 39 | 4.07 | 0 | Hydrophobic |
| O3' | O | LEU- 53 | 3.46 | 163.5 | H-Bond (Ligand Donor) |
| C3' | CB | ALA- 57 | 4.03 | 0 | Hydrophobic |
| C5' | CB | ASN- 89 | 3.81 | 0 | Hydrophobic |
| O5' | OD2 | ASP- 93 | 2.75 | 170.48 | H-Bond (Protein Donor) |
| N3 | OD2 | ASP- 188 | 2.99 | 160.71 | H-Bond (Ligand Donor) |
| C1' | CG2 | THR- 212 | 4.49 | 0 | Hydrophobic |
| C5M | CG2 | THR- 212 | 4.27 | 0 | Hydrophobic |
| O4 | NZ | LYS- 215 | 2.53 | 171.58 | H-Bond (Protein Donor) |
| C2' | CZ | PHE- 232 | 4.12 | 0 | Hydrophobic |