2.330 Å
X-ray
2011-12-10
Name: | Strictosidine synthase |
---|---|
ID: | STSY_RAUSE |
AC: | P68175 |
Organism: | Rauvolfia serpentina |
Reign: | Eukaryota |
TaxID: | 4060 |
EC Number: | 4.3.3.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 59.389 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.021 | 621.000 |
% Hydrophobic | % Polar |
---|---|
56.52 | 43.48 |
According to VolSite |
HET Code: | 0LH |
---|---|
Formula: | C10H13N2 |
Molecular weight: | 161.224 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 60.36 % |
Polar Surface area: | 32.57 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 0 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-27.2977 | 45.598 | 8.19725 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAD | CG2 | VAL- 176 | 4.35 | 0 | Hydrophobic |
CAB | CG1 | VAL- 176 | 3.86 | 0 | Hydrophobic |
CAD | CD1 | ILE- 179 | 3.89 | 0 | Hydrophobic |
CAB | CG2 | ILE- 179 | 3.92 | 0 | Hydrophobic |
CAC | SD | MET- 180 | 3.93 | 0 | Hydrophobic |
CAJ | CG1 | VAL- 208 | 3.65 | 0 | Hydrophobic |
CAI | CD1 | PHE- 226 | 3.86 | 0 | Hydrophobic |
NAA | OE2 | GLU- 309 | 3.16 | 154.05 | H-Bond (Ligand Donor) |
NAA | OE2 | GLU- 309 | 3.16 | 0 | Ionic (Ligand Cationic) |
NAA | OE1 | GLU- 309 | 3.38 | 0 | Ionic (Ligand Cationic) |