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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4asf62UATP-dependent molecular chaperone HSP82

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4asf62UATP-dependent molecular chaperone HSP82/1.000
1osfKOSHeat shock protein HSP 90-alpha/0.658
4xdmGDMHeat shock cognate 90 kDa protein/0.647
1yetGDMHeat shock protein HSP 90-alpha/0.630
2exlGDMEndoplasmin/0.610
3pejBC2Endoplasmin homolog, putative/0.584
3c11GDMATP-dependent molecular chaperone HSP82/0.582
4as94QSATP-dependent molecular chaperone HSP82/0.580
2vw5BC6ATP-dependent molecular chaperone HSP82/0.577
2byi2DDHeat shock protein HSP 90-alpha/0.571
4ce17FKATP-dependent molecular chaperone HSP82/0.570
3r4pFU7Heat shock protein HSP 90-alpha/0.567
4jqlVJ6Heat shock protein HSP 90-alpha/0.567
2byh2D7Heat shock protein HSP 90-alpha/0.564
3k974CDHeat shock protein HSP 90-alpha/0.557
2vwcBC2ATP-dependent molecular chaperone HSP82/0.552
3vhaVHAHeat shock protein HSP 90-alpha/0.552
3t10ACPHeat shock protein HSP 90-alpha/0.551
2xabVHDHeat shock protein HSP 90-alpha/0.550
4bqjXKLHeat shock protein HSP 90-alpha/0.549
4ce2BO5ATP-dependent molecular chaperone HSP82/0.548
2esaGDMEndoplasmin/0.547
1am1ADPATP-dependent molecular chaperone HSP82/0.545
2qg0A94Heat shock protein HSP 90-alpha/0.543
2xk2ADPHeat shock protein HSP 90-alpha/0.542
4gqtADPHeat shock protein 90/0.539
3r4oFU3Heat shock protein HSP 90-alpha/0.537
1uyePU9Heat shock protein HSP 90-alpha/0.536
2breKJ2ATP-dependent molecular chaperone HSP82/0.535
1uy7PU4Heat shock protein HSP 90-alpha/0.533
4egiB2JHeat shock protein HSP 90-alpha/0.533
4xclAGSHeat shock cognate 90 kDa protein/0.533
2xcmADPCytosolic heat shock protein 90/0.532
2yee2ECHeat shock protein HSP 90-alpha/0.532
4ipeANPTNF receptor-associated protein 1/0.531
2yegXQGHeat shock protein HSP 90-alpha/0.530
3k99PFTHeat shock protein HSP 90-alpha/0.530
3t2sAGSHeat shock protein HSP 90-alpha/0.530
2werRDCATP-dependent molecular chaperone HSP82/0.529
4asg814ATP-dependent molecular chaperone HSP82/0.528
2xhtC0YHeat shock protein HSP 90-alpha/0.527
2yefANPHeat shock protein HSP 90-alpha/0.527
2iwuNP5ATP-dependent molecular chaperone HSP82/0.525
2xd6XD6ATP-dependent molecular chaperone HSP82/0.525
3k981RCHeat shock protein HSP 90-alpha/0.525
1uy9PU6Heat shock protein HSP 90-alpha/0.523
2fxsRDAATP-dependent molecular chaperone HSP82/0.523
3hhu819Heat shock protein HSP 90-alpha/0.523
3inxJZCHeat shock protein HSP 90-alpha/0.523
1u0zRDCEndoplasmin/0.522
1y4sADPChaperone protein HtpG/0.522
4xcjADPHeat shock cognate 90 kDa protein/0.522
2wepADPATP-dependent molecular chaperone HSP82/0.521
1yszNECEndoplasmin/0.520
1uy8PU5Heat shock protein HSP 90-alpha/0.517
3hz142CHeat shock protein HSP 90-alpha/0.517
3ekrPY9Heat shock protein HSP 90-alpha/0.516
1yc34BCHeat shock protein HSP 90-alpha/0.515
2bt0CT5Heat shock protein HSP 90-alpha/0.515
2fwyH64Heat shock protein HSP 90-alpha/0.515
4fcr0TMHeat shock protein HSP 90-alpha/0.515
1yc443PHeat shock protein HSP 90-alpha/0.514
2brcCT5ATP-dependent molecular chaperone HSP82/0.513
3d0bSNXHeat shock protein HSP 90-alpha/0.513
4b7p9UNHeat shock protein HSP 90-alpha/0.513
1u0yPA7Endoplasmin/0.512
2xjjL81Heat shock protein HSP 90-alpha/0.512
3hyz42CHeat shock protein HSP 90-alpha/0.510
2xhrC0PHeat shock protein HSP 90-alpha/0.509
3o0iP54Heat shock protein HSP 90-alpha/0.509
3r4nFU5Heat shock protein HSP 90-alpha/0.509
2qg2A91Heat shock protein HSP 90-alpha/0.508
3ft8MOJHeat shock protein HSP 90-alpha/0.508
3qdd94MHeat shock protein HSP 90-alpha/0.507
1byqADPHeat shock protein HSP 90-alpha/0.506
2wi4ZZ4Heat shock protein HSP 90-alpha/0.506
2gqpPA7Endoplasmin/0.505
1uykPUXHeat shock protein HSP 90-alpha/0.502
2xx213CATP-dependent molecular chaperone HSP82/0.502
1amwADPATP-dependent molecular chaperone HSP82/0.501
2fwzH71Heat shock protein HSP 90-alpha/0.501
3t1kANPHeat shock protein HSP 90-alpha/0.500
3hz5Z64Heat shock protein HSP 90-alpha/0.499
3t0zATPHeat shock protein HSP 90-alpha/0.499
2xjxXJXHeat shock protein HSP 90-alpha/0.498
1uydPU8Heat shock protein HSP 90-alpha/0.497
2ykcYKCHeat shock protein HSP 90-alpha/0.496
2fypRDEEndoplasmin/0.495
2wi6ZZ6Heat shock protein HSP 90-alpha/0.495
3iedAN2HSP90/0.495
2yejZZ3Heat shock protein HSP 90-alpha/0.494
2ykjYKJHeat shock protein HSP 90-alpha/0.494
4egkRDCHeat shock protein HSP 90-alpha/0.494
2wi72KLHeat shock protein HSP 90-alpha/0.491
4efuEFUHeat shock protein HSP 90-alpha/0.491
1uyiPUZHeat shock protein HSP 90-alpha/0.490
1uymPU3Heat shock protein HSP 90-beta/0.490
3rlr3RRHeat shock protein HSP 90-alpha/0.490
2bz5AB4Heat shock protein HSP 90-alpha/0.489
4nh82LCHeat shock protein HSP 90-alpha/0.489
2iorADPChaperone protein HtpG/0.488
2zdyADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.488
3ekoPYUHeat shock protein HSP 90-alpha/0.488
5f5rANPHeat shock protein 75 kDa, mitochondrial/0.487
4ce3L4VATP-dependent molecular chaperone HSP82/0.486
3mnrSD1Heat shock protein HSP 90-alpha/0.485
1uy6PU3Heat shock protein HSP 90-alpha/0.484
3rlq3RQHeat shock protein HSP 90-alpha/0.483
1bgqRDCATP-dependent molecular chaperone HSP82/0.482
1uyfPU1Heat shock protein HSP 90-alpha/0.481
1i59ANPChemotaxis protein CheA2.7.13.30.480
3pehIBDEndoplasmin homolog, putative/0.479
2cgfP2NATP-dependent molecular chaperone HSP82/0.478
2o1vADPEndoplasmin/0.478
1jioDEB6-deoxyerythronolide B hydroxylase/0.477
1qy8RDIEndoplasmin/0.477
4ivgANPTNF receptor-associated protein 1/0.477
2ykeYKEHeat shock protein HSP 90-alpha/0.476
1k6tXN1Gag-Pol polyprotein3.4.23.160.475
2yeiXQIHeat shock protein HSP 90-alpha/0.475
3opdHIEHeat shock protein 83/0.475
3hekBD0Heat shock protein HSP 90-alpha/0.474
1jm6ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.473
2iwxM1SATP-dependent molecular chaperone HSP82/0.473
2qfoA13Heat shock protein HSP 90-alpha/0.473
2ykbYKBHeat shock protein HSP 90-alpha/0.473
1xl2189Gag-Pol polyprotein3.4.23.160.472
2h55DZ8Heat shock protein HSP 90-alpha/0.472
2zkjADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.472
3nwxKVSGag-Pol polyprotein3.4.23.160.472
3o6o94MHeat shock protein 83/0.472
1nhhANPDNA mismatch repair protein MutL/0.471
2bu8ADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.471
1u2oNECEndoplasmin/0.470
2ykiYKIHeat shock protein HSP 90-alpha/0.470
2brgDFYSerine/threonine-protein kinase Chk12.7.11.10.469
3crlANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial2.7.11.20.469
3d2rADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.469
4uymVOR14-alpha sterol demethylase Cyp51B/0.469
2o1uANPEndoplasmin/0.468
1k6pXN3Gag-Pol polyprotein3.4.23.160.467
2e0aANP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.467
4bf2STUMitogen-activated protein kinase kinase kinase 52.7.11.250.467
4h4uNDPBiphenyl dioxygenase ferredoxin reductase subunit/0.467
3inwJZBHeat shock protein HSP 90-alpha/0.466
4xc0ACPHeat shock cognate 90 kDa protein/0.466
2hchN5AEndoplasmin/0.465
3oibFDAPutative acyl-CoA dehydrogenase/0.465
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.464
3hrcATP3-phosphoinositide-dependent protein kinase 12.7.11.10.463
4cdmFADDeoxyribodipyrimidine photolyase/0.463
4gk2L66Ephrin type-A receptor 32.7.10.10.463
3r7yZ04Cyclin-dependent kinase 22.7.11.220.462
1bwsNDPGDP-L-fucose synthase/0.461
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.461
2gfdRDAEndoplasmin/0.461
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.461
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.460
5e8wSTUTGF-beta receptor type-12.7.11.300.460
1xddAAYIntegrin alpha-L/0.459
2qnqQN3Gag-Pol polyprotein3.4.23.160.458
2vx17X8Ephrin type-B receptor 42.7.10.10.458
3qyw6PBMitogen-activated protein kinase 12.7.11.240.458
2xa4AZ5Tyrosine-protein kinase JAK2/0.457
2yk2YJWHeat shock protein HSP 90-alpha/0.457
3nwq2NCGag-Pol polyprotein3.4.23.160.457
3r71X86Cyclin-dependent kinase 22.7.11.220.457
1bygSTUTyrosine-protein kinase CSK/0.456
2a1mCAMCamphor 5-monooxygenase1.14.15.10.456
4ezk0SDPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.456
1svmATPLarge T antigen3.6.40.455
2i4pDRHPeroxisome proliferator-activated receptor gamma/0.455
2om9AJAPeroxisome proliferator-activated receptor gamma/0.455
2vci2GJHeat shock protein HSP 90-alpha/0.455
4l425FIRibosomal protein S6 kinase beta-12.7.11.10.455
1gjvAGS[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial2.7.11.40.454
2i40BLZCyclin-dependent kinase 22.7.11.220.454
2qhcAB1Protease/0.454
2y8qADP5'-AMP-activated protein kinase subunit gamma-1/0.454
3dgeADPSensor histidine kinase/0.454
3el4ROCGag-Pol polyprotein3.4.23.160.454
3t3c017Gag-Pol polyprotein3.4.23.160.454
5ar4SB2Receptor-interacting serine/threonine-protein kinase 22.7.11.10.454
1i59ADPChemotaxis protein CheA2.7.13.30.453
1unlRRCCyclin-dependent-like kinase 52.7.11.10.453
4asjN6AGlucose-1-phosphate thymidylyltransferase/0.453
4b99R4LMitogen-activated protein kinase 72.7.11.240.453
4riyADPEpidermal growth factor receptor2.7.10.10.453
1wbk568Pol protein/0.452
2brhDFWSerine/threonine-protein kinase Chk12.7.11.10.452
2hs2017Protease/0.452
2xvdAS6Ephrin type-B receptor 42.7.10.10.452
3mvqNDPGlutamate dehydrogenase 1, mitochondrial1.4.1.30.452
3r8uZ31Cyclin-dependent kinase 22.7.11.220.452
4fad0TBPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.452
4qq3XMPInosine-5'-monophosphate dehydrogenase/0.452
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.451
1i58ADPChemotaxis protein CheA2.7.13.30.451
2vwy7X5Ephrin type-B receptor 42.7.10.10.451
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.451
4awo99BHeat shock protein HSP 90-alpha/0.451
4gk3L87Ephrin type-A receptor 32.7.10.10.451
4o0rX4ZSerine/threonine-protein kinase PAK 12.7.11.10.451
5ackATP3-phosphoinositide-dependent protein kinase 12.7.11.10.451
1tvoFRZMitogen-activated protein kinase 12.7.11.240.450
3cyxROCGag-Pol polyprotein3.4.23.160.450
3d8vUD1Bifunctional protein GlmU/0.450
3zpuM8BGag-Pol polyprotein3.4.23.160.450
4c3f7KWTyrosine-protein kinase Lck2.7.10.20.450
4eilCB3Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.450
1h1s4SPCyclin-dependent kinase 22.7.11.220.449
3qqlX03Cyclin-dependent kinase 22.7.11.220.448
4awq592Heat shock protein HSP 90-alpha/0.448
4gu610NFocal adhesion kinase 12.7.10.20.448
1dnpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.447
1nzfUPGDNA beta-glucosyltransferase/0.447
1qy5NECEndoplasmin/0.447
2ccu2D9Heat shock protein HSP 90-alpha/0.447
2pym1UNGag-Pol polyprotein3.4.23.160.447
2vcj2EQHeat shock protein HSP 90-alpha/0.447
2vwz7X6Ephrin type-B receptor 42.7.10.10.447
3p3zP3ZPutative cytochrome P450/0.447
4a06ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.447
4bzo676Serine/threonine-protein kinase pim-12.7.11.10.447
4nh92LCEndoplasmin/0.447
4qmxH8HSerine/threonine-protein kinase 242.7.11.10.447
1i5cADPChemotaxis protein CheA2.7.13.30.446
1q5dEPBEpothilone C/D epoxidase1.140.446
1t87CAMCamphor 5-monooxygenase1.14.15.10.446
1uycPU7Heat shock protein HSP 90-alpha/0.446
1yw2PGJMitogen-activated protein kinase 14/0.446
2brmDFZSerine/threonine-protein kinase Chk12.7.11.10.446
2hg1N5OEndoplasmin/0.446
2iwsNP4ATP-dependent molecular chaperone HSP82/0.446
2xx413IATP-dependent molecular chaperone HSP82/0.446
2ym44YMSerine/threonine-protein kinase Chk12.7.11.10.446
3ii43IIDihydrolipoyl dehydrogenase1.8.1.40.446
3livE16Protease/0.446
5c8wPCGcGMP-dependent protein kinase 22.7.11.120.446
1ep4S11Gag-Pol polyprotein2.7.7.490.445
1eupASD6-deoxyerythronolide B hydroxylase/0.445
1kzkJE2Gag-Pol polyprotein3.4.23.160.445
1y0s331Peroxisome proliferator-activated receptor delta/0.445
2qak1UNGag-Pol polyprotein3.4.23.160.445
2wi5ZZ5Heat shock protein HSP 90-alpha/0.445
2zdxP4A[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.445
3b28B2XHeat shock protein HSP 90-alpha/0.445
3oxxDR7Gag-Pol polyprotein3.4.23.160.445
4ct1ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.445
1np7FADCryptochrome DASH/0.444
1uyhPU0Heat shock protein HSP 90-alpha/0.444
1yt0ADPEndoplasmin/0.444
2acxANPG protein-coupled receptor kinase 62.7.11.160.444
2etm7PYFocal adhesion kinase 12.7.10.20.444
2ijmADPFocal adhesion kinase 12.7.10.20.444
2oz6CMPCyclic AMP receptor-like protein/0.444
3hx4ANPCalmodulin-domain protein kinase 1/0.444
3s79ASDAromatase1.14.14.140.444
4bcqTJFCyclin-dependent kinase 22.7.11.220.444
1tqf32PBeta-secretase 13.4.23.460.443
1yc14BCHeat shock protein HSP 90-alpha/0.443
2avvMK1Gag-Pol polyprotein3.4.23.160.443
2brbPFQSerine/threonine-protein kinase Chk12.7.11.10.443
2p33J07Mitogen-activated protein kinase 102.7.11.240.443
3cukFADD-amino-acid oxidase1.4.3.30.443
3el1DR7Gag-Pol polyprotein3.4.23.160.443
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.443
5ifyUMPGlucose-1-phosphate thymidylyltransferase/0.443
1c70L75Protease/0.442
1k6vXN2Gag-Pol polyprotein3.4.23.160.442
1s4dSAHUroporphyrinogen-III C-methyltransferase2.1.1.1070.442
2zbaZBATrichothecene 3-O-acetyltransferase/0.442
3aidARQGag-Pol polyprotein3.4.23.160.442
3q5kD1UHeat shock protein 83-1/0.442
4g3rCAMCamphor 5-monooxygenase1.14.15.10.442
4xumIMNPeroxisome proliferator-activated receptor gamma/0.442
1e7qNAPGDP-L-fucose synthase/0.441
1hosPHPGag-Pol polyprotein/0.441
1k6cMK1Gag-Pol polyprotein3.4.23.160.441
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1sguMK1Gag-Pol polyprotein3.4.23.160.441
2c6mDT5Cyclin-dependent kinase 22.7.11.220.441
2j0k4STFocal adhesion kinase 12.7.10.20.441
2j3jHC4NADPH-dependent oxidoreductase 2-alkenal reductase1.3.1.740.441
2vzmNRBCytochrome P450 monooxygenase PikC/0.441
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.441
3ekx1UNGag-Pol polyprotein3.4.23.160.441
4ftr5HKSerine/threonine-protein kinase Chk12.7.11.10.441
4fv0EK3Mitogen-activated protein kinase 12.7.11.240.441
4u9aSTUInterleukin-1 receptor-associated kinase 42.7.11.10.441
5kjcPFBAlcohol dehydrogenase E chain1.1.1.10.441
1hsgMK1Gag-Pol polyprotein/0.440
1o76CAMCamphor 5-monooxygenase1.14.15.10.440
1t2bCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.440
1zmcNADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.440
2i4zDRHPeroxisome proliferator-activated receptor gamma/0.440
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.440
3c4xATPRhodopsin kinase/0.440
3r83Z14Cyclin-dependent kinase 22.7.11.220.440
3s1cZIRCytokinin dehydrogenase 11.5.99.120.440
3s56ROCProtease/0.440
3zhqTPPMultifunctional 2-oxoglutarate metabolism enzyme1.2.4.20.440
4a6cQG9Gag-Pol polyprotein3.4.23.160.440
4g7gVFVLanosterol 14-alpha-demethylase/0.440
4xivACPChemotaxis protein CheA2.7.13.30.440