2.400 Å
X-ray
2012-10-02
| Name: | Cyclin-dependent kinase 2 |
|---|---|
| ID: | CDK2_HUMAN |
| AC: | P24941 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.22 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 51.498 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.077 | 651.375 |
| % Hydrophobic | % Polar |
|---|---|
| 50.26 | 49.74 |
| According to VolSite | |

| HET Code: | TJF |
|---|---|
| Formula: | C21H21N7O2S |
| Molecular weight: | 435.502 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 41.4 % |
| Polar Surface area: | 144.3 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 2 |
| Rings: | 4 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 34.985 | -18.6828 | 32.5874 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C15 | CG2 | ILE- 10 | 3.84 | 0 | Hydrophobic |
| C27 | CD1 | ILE- 10 | 3.83 | 0 | Hydrophobic |
| C14 | CG2 | ILE- 10 | 3.88 | 0 | Hydrophobic |
| C06 | CG1 | VAL- 18 | 3.66 | 0 | Hydrophobic |
| C06 | CB | ALA- 31 | 4.21 | 0 | Hydrophobic |
| C30 | CB | ALA- 31 | 4.43 | 0 | Hydrophobic |
| C06 | CD2 | PHE- 80 | 4.06 | 0 | Hydrophobic |
| N11 | O | LEU- 83 | 3.02 | 132.98 | H-Bond (Ligand Donor) |
| N28 | N | LEU- 83 | 3.19 | 159.43 | H-Bond (Protein Donor) |
| C19 | CG | GLN- 85 | 4.12 | 0 | Hydrophobic |
| C13 | CD2 | LEU- 134 | 4.44 | 0 | Hydrophobic |
| C30 | CD1 | LEU- 134 | 3.59 | 0 | Hydrophobic |