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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3v2jAZMCarbonic anhydrase 24.2.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3v2jAZMCarbonic anhydrase 24.2.1.11.000
3dccD9ZCarbonic anhydrase 24.2.1.10.782
1a42BZUCarbonic anhydrase 24.2.1.10.763
3dazMZMCarbonic anhydrase 24.2.1.10.758
3d8wD8WCarbonic anhydrase 24.2.1.10.756
1cnwEG1Carbonic anhydrase 24.2.1.10.744
3dcwEZLCarbonic anhydrase 24.2.1.10.737
3p5lIT5Carbonic anhydrase 24.2.1.10.737
2h15B19Carbonic anhydrase 24.2.1.10.724
1bnwTPDCarbonic anhydrase 24.2.1.10.708
3k2fNKXCarbonic anhydrase 24.2.1.10.705
1g52F2BCarbonic anhydrase 24.2.1.10.702
3m5eJDRCarbonic anhydrase 24.2.1.10.701
4bf19FKCarbonic anhydrase 24.2.1.10.698
3oikWZBCarbonic anhydrase 24.2.1.10.697
3b4fTUOCarbonic anhydrase 24.2.1.10.694
3eft3BSCarbonic anhydrase 24.2.1.10.691
1cnxEG2Carbonic anhydrase 24.2.1.10.686
1bnnAL1Carbonic anhydrase 24.2.1.10.682
3d9zD9ZCarbonic anhydrase 24.2.1.10.680
3dbuD8WCarbonic anhydrase 24.2.1.10.676
1bn4AL9Carbonic anhydrase 24.2.1.10.673
2q1qOSPCarbonic anhydrase 24.2.1.10.672
1kwrSG2Carbonic anhydrase 24.2.1.10.669
1bnuAL3Carbonic anhydrase 24.2.1.10.667
1i9nIOACarbonic anhydrase 24.2.1.10.666
1bn1AL5Carbonic anhydrase 24.2.1.10.662
1g1dFSBCarbonic anhydrase 24.2.1.10.662
2eu3FF3Carbonic anhydrase 24.2.1.10.661
3bl1BL1Carbonic anhydrase 24.2.1.10.660
4itoMPXCarbonic anhydrase 24.2.1.10.656
4mo82VQCarbonic anhydrase 24.2.1.10.655
1oknSTBCarbonic anhydrase 24.2.1.10.654
1zsbAZMCarbonic anhydrase 24.2.1.10.654
3sbhE65Carbonic anhydrase 24.2.1.10.654
2wehFB1Carbonic anhydrase 24.2.1.10.652
3mhcARZCarbonic anhydrase 24.2.1.10.652
1if7SBRCarbonic anhydrase 24.2.1.10.650
3oy0OY0Carbonic anhydrase 24.2.1.10.650
2wejFB2Carbonic anhydrase 24.2.1.10.648
3dd82C7Carbonic anhydrase 24.2.1.10.648
3rz8RZ8Carbonic anhydrase 24.2.1.10.648
2h4nAZMCarbonic anhydrase 24.2.1.10.647
1if6FBUCarbonic anhydrase 24.2.1.10.644
1kwqSG1Carbonic anhydrase 24.2.1.10.643
1bnvAL7Carbonic anhydrase 24.2.1.10.642
3m2nJ74Carbonic anhydrase 24.2.1.10.642
4ilx1EZCarbonic anhydrase 24.2.1.10.642
3oyqOYQCarbonic anhydrase 24.2.1.10.641
3ml2SU0Carbonic anhydrase 24.2.1.10.640
1g4oBSBCarbonic anhydrase 24.2.1.10.638
4dz7D02Carbonic anhydrase 24.2.1.10.637
3betCTFCarbonic anhydrase 24.2.1.10.634
1xpz4TZCarbonic anhydrase 24.2.1.10.628
3mhoJ43Carbonic anhydrase 24.2.1.10.628
3qykIE2Carbonic anhydrase 24.2.1.10.621
1cilETSCarbonic anhydrase 24.2.1.10.620
1bnqAL4Carbonic anhydrase 24.2.1.10.619
4iwz1GOCarbonic anhydrase 24.2.1.10.619
4kap1QVCarbonic anhydrase 24.2.1.10.619
1bntAL2Carbonic anhydrase 24.2.1.10.618
1i90INMCarbonic anhydrase 24.2.1.10.617
1if4FBSCarbonic anhydrase 24.2.1.10.614
1ttm667Carbonic anhydrase 24.2.1.10.612
3n4bWWZCarbonic anhydrase 24.2.1.10.611
4bf6X0QCarbonic anhydrase 24.2.1.10.611
1okmSABCarbonic anhydrase 24.2.1.10.608
4kniE1ECarbonic anhydrase 24.2.1.10.608
1cnyEG3Carbonic anhydrase 24.2.1.10.606
3dc3AZMCarbonic anhydrase 24.2.1.10.606
1i91INQCarbonic anhydrase 24.2.1.10.604
3l14I7BCarbonic anhydrase 24.2.1.10.602
1oklMNSCarbonic anhydrase 24.2.1.10.601
3n3jWWVCarbonic anhydrase 24.2.1.10.601
4n16CHDCarbonic anhydrase 24.2.1.10.601
1if5FBTCarbonic anhydrase 24.2.1.10.600
3n2pAYXCarbonic anhydrase 24.2.1.10.598
3mzcS6ICarbonic anhydrase 24.2.1.10.596
1bn3AL6Carbonic anhydrase 24.2.1.10.594
3mnaDWHCarbonic anhydrase 24.2.1.10.594
3oimVZ5Carbonic anhydrase 24.2.1.10.594
3po6DT9Carbonic anhydrase 24.2.1.10.592
2weoFBWCarbonic anhydrase 24.2.1.10.591
3ffpLC1Carbonic anhydrase 24.2.1.10.591
1bnmAL8Carbonic anhydrase 24.2.1.10.590
3m98E02Carbonic anhydrase 24.2.1.10.590
3oysOYSCarbonic anhydrase 24.2.1.10.588
4k0tD9ZCarbonic anhydrase 24.2.1.10.587
3m67E36Carbonic anhydrase 24.2.1.10.584
3mhlJ71Carbonic anhydrase 24.2.1.10.583
3igpDT7Carbonic anhydrase 24.2.1.10.582
1g4jFFBCarbonic anhydrase 24.2.1.10.577
3f4xKLTCarbonic anhydrase 24.2.1.10.575
3n0nP9BCarbonic anhydrase 24.2.1.10.575
3mmfD9HCarbonic anhydrase 24.2.1.10.572
1i8zINLCarbonic anhydrase 24.2.1.10.571
3myqE27Carbonic anhydrase 24.2.1.10.570
2wegFBVCarbonic anhydrase 24.2.1.10.569
3dcsMZMCarbonic anhydrase 24.2.1.10.569
3kigDA4Carbonic anhydrase 24.2.1.10.569
1g45FSBCarbonic anhydrase 24.2.1.10.567
3mhiJ90Carbonic anhydrase 24.2.1.10.567
2wd2MS5Carbonic anhydrase 24.2.1.10.563
4itp1GDCarbonic anhydrase 24.2.1.10.562
3m2yBE0Carbonic anhydrase 24.2.1.10.558
4k0zMZMCarbonic anhydrase 24.2.1.10.558
1eouSMSCarbonic anhydrase 24.2.1.10.556
3m40J45Carbonic anhydrase 24.2.1.10.555
3saxE50Carbonic anhydrase 24.2.1.10.554
1if8SBSCarbonic anhydrase 24.2.1.10.553
3s8xE59Carbonic anhydrase 24.2.1.10.553
3hkuTORCarbonic anhydrase 24.2.1.10.549
5fl49FKCarbonic anhydrase 94.2.1.10.549
4pxxCHDCarbonic anhydrase 24.2.1.10.547
3mdzEZLCarbonic anhydrase 74.2.1.10.546
2powI7CCarbonic anhydrase 24.2.1.10.545
4m2rBZ1Carbonic anhydrase 24.2.1.10.538
1xq04TRCarbonic anhydrase 24.2.1.10.537
1ydaAZMCarbonic anhydrase 24.2.1.10.534
3sbiE90Carbonic anhydrase 24.2.1.10.534
3dd0EZLCarbonic anhydrase 24.2.1.10.531
3t84SG6Carbonic anhydrase 24.2.1.10.528
3ni5C1HCarbonic anhydrase 24.2.1.10.523
4xiwAZMCarbonic anhydrase, alpha type/0.523
1oq5CELCarbonic anhydrase 24.2.1.10.522
5fltVJJCarbonic anhydrase 24.2.1.10.522
2x7uWZACarbonic anhydrase 24.2.1.10.519
2x7tWZBCarbonic anhydrase 24.2.1.10.514
3nb5R21Carbonic anhydrase 24.2.1.10.514
3t82SG4Carbonic anhydrase 24.2.1.10.514
3s9tE49Carbonic anhydrase 24.2.1.10.509
4knjE1FCarbonic anhydrase 24.2.1.10.509
1jd0AZMCarbonic anhydrase 124.2.1.10.507
4k13ETSCarbonic anhydrase 24.2.1.10.506
4knmE1ECarbonic anhydrase 134.2.1.10.506
4ht2V50Carbonic anhydrase 124.2.1.10.500
4m2vBZ1Carbonic anhydrase 24.2.1.10.497
4bfvZVVPantothenate kinase2.7.1.330.496
3f7uAG4Carbonic anhydrase 44.2.1.10.494
4kp8E1GCarbonic anhydrase 124.2.1.10.492
1g54FFBCarbonic anhydrase 24.2.1.10.490
2yq92AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.490
3m96E38Carbonic anhydrase 24.2.1.10.490
1rj6AZMCarbonic anhydrase 144.2.1.10.489
3zncBZ1Carbonic anhydrase 44.2.1.10.488
1i9qIOFCarbonic anhydrase 24.2.1.10.487
3fw3ETSCarbonic anhydrase 44.2.1.10.487
1i9pIOECarbonic anhydrase 24.2.1.10.484
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.484
2q1uNADPutative nucleotide sugar epimerase/ dehydratase/0.484
3t85SG7Carbonic anhydrase 24.2.1.10.484
4bfwZVWPantothenate kinase2.7.1.330.484
1a5bIGPTryptophan synthase alpha chain/0.483
2gv8NDPThiol-specific monooxygenase1.14.130.483
4kp5E1FCarbonic anhydrase 124.2.1.10.483
3f7bAG5Carbonic anhydrase 44.2.1.10.482
4b4vL34Bifunctional protein FolD/0.480
4lu3AZMCarbonic anhydrase 144.2.1.10.480
2g1n1IGRenin3.4.23.150.479
2xjeU5PCytosolic purine 5'-nucleotidase3.1.3.50.478
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.477
1n95HFPProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.477
1n95HFPProtein farnesyltransferase subunit beta2.5.1.580.477
1qoqIGPTryptophan synthase alpha chain/0.472
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.471
2q7oIMHPurine nucleoside phosphorylase2.4.2.10.471
3e6eDCSAlanine racemase/0.471
3w6hAZMCarbonic anhydrase 14.2.1.10.471
1bk0ACVIsopenicillin N synthase1.21.3.10.467
1nl4HFPProtein farnesyltransferase subunit beta2.5.1.580.466
2g1o2IGRenin3.4.23.150.466
3exhTPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.466
3exhTPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.466
1hb1OCVIsopenicillin N synthase1.21.3.10.465
1uxyEPUUDP-N-acetylenolpyruvoylglucosamine reductase1.3.1.980.465
4bb3KKAIsopenicillin N synthase1.21.3.10.465
4jicFMNGTN Reductase/0.465
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.463
3ziuLSSLeucyl-tRNA synthetase/0.463
2g21L1BRenin3.4.23.150.462
2jb4A14Isopenicillin N synthase1.21.3.10.462
4bfzZVZPantothenate kinase2.7.1.330.462
1h85FADFerredoxin--NADP reductase1.18.1.20.461
4psbGA3Cytokinin-specific binding protein/0.461
1ivsVAAValine--tRNA ligase6.1.1.90.460
3dr7GPDGDP-perosamine synthase/0.460
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.459
2a5hSAML-lysine 2,3-aminomutase5.4.3.20.458
3h3t16HCollagen type IV alpha-3-binding protein/0.458
3jsxCC2NAD(P)H dehydrogenase [quinone] 11.6.5.20.458
4gv4MEJPoly [ADP-ribose] polymerase 32.4.2.300.458
2g1y5IGRenin3.4.23.150.457
2ikuLIYRenin3.4.23.150.457
3h3r14HCollagen type IV alpha-3-binding protein/0.457
3zoiM2WIsopenicillin N synthase1.21.3.10.457
1rr6IMHPurine nucleoside phosphorylase2.4.2.10.456
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.456
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.456
3lxeTORCarbonic anhydrase 14.2.1.10.456
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.456
4e2yJHZMethyltransferase/0.456
4f0rMTA5-methylthioadenosine/S-adenosylhomocysteine deaminase/0.456
1b5eDCMDeoxycytidylate 5-hydroxymethyltransferase2.1.2.80.455
1h51FMNPentaerythritol tetranitrate reductase/0.455
2iviACWIsopenicillin N synthase1.21.3.10.455
1n95FTHProtein farnesyltransferase subunit beta2.5.1.580.454
2a59LMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.454
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.454
2q1tNADPutative nucleotide sugar epimerase/ dehydratase/0.454
2qimZEAClass 10 plant pathogenesis-related protein/0.453
4kp61S1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.453
1gky5GPGuanylate kinase2.7.4.80.452
2vn1FK5Peptidylprolyl isomerase/0.452
4kfqKFQGlutamate receptor ionotropic, NMDA 1/0.452
1qpl587Peptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.451
2g1r3IGRenin3.4.23.150.451
2x95X95Angiotensin-converting enzyme3.4.15.10.451
1o1s1NHProtein farnesyltransferase subunit beta2.5.1.580.450
3af0GDPPantothenate kinase2.7.1.330.450
4hmz18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.450
4zzi1NSNAD-dependent protein deacetylase sirtuin-13.5.10.450
5kghACOPredicted acetyltransferase/0.450
1jdvADNPurine nucleoside phosphorylase/0.449
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.449
2y60M8FIsopenicillin N synthase1.21.3.10.449
3ch6311Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.449
3eksCY9Actin-5C/0.449
3zkyWT4Isopenicillin N synthase1.21.3.10.449
4a87NARMajor pollen allergen Bet v 1-A/0.449
4bfxZVXPantothenate kinase2.7.1.330.449
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.449
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.449
4xbjIN5Alanine racemase, biosynthetic/0.449
5c3rHMUThymine dioxygenase/0.449
1obnASVIsopenicillin N synthase1.21.3.10.448
2a57CRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.448
2rqfJH3Hemolymph juvenile hormone binding protein/0.448
2x06NADL-sulfolactate dehydrogenase/0.448
3af1GDPPantothenate kinase2.7.1.330.448
4wfr2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.448
4xnw2IDP2Y purinoceptor 1/0.448
1kw8BPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.447
2pj4414Carboxypeptidase B/0.447
2po3T4K4-dehydrase/0.447
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.447
2whqHI6Acetylcholinesterase3.1.1.70.447
3h3qH13Collagen type IV alpha-3-binding protein/0.447
4guuFA9Lysine-specific histone demethylase 1B10.447
2g25TDKPyruvate dehydrogenase E1 component1.2.4.10.446
2g28TDKPyruvate dehydrogenase E1 component1.2.4.10.446
2vbdV10Isopenicillin N synthase1.21.3.10.446
3d5qT30Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.446
3qsaTA7Anthranilate phosphoribosyltransferase/0.446
4bftZVTPantothenate kinase2.7.1.330.446
1akbPPDAspartate aminotransferase, mitochondrial2.6.1.10.445
1dmyAZMCarbonic anhydrase 5A, mitochondrial4.2.1.10.445
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.445
1qh0FADFerredoxin--NADP reductase1.18.1.20.445
1qrsATPGlutamine--tRNA ligase6.1.1.180.445
1xl8152Peroxisomal carnitine O-octanoyltransferase2.3.1.1370.445
2yltNAPPhenylacetone monooxygenase1.14.13.920.445
3jsiWTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
1k7fIAVTryptophan synthase alpha chain/0.444
1kkq471Peroxisome proliferator-activated receptor alpha/0.444
2g8yNADHydroxycarboxylate dehydrogenase B/0.444
2iko7IGRenin3.4.23.150.444
2xuoTZ4Acetylcholinesterase3.1.1.70.444
3aw9GDUNAD-dependent epimerase/dehydratase/0.444
3e32ED2Protein farnesyltransferase subunit beta2.5.1.580.444
3ewkFADSensory box histidine kinase/response regulator/0.444
3qe2FMNNADPH--cytochrome P450 reductase/0.444
4x7uZM3Mycinamicin III 3''-O-methyltransferase2.1.1.2370.444
6stdMS2Scytalone dehydratase4.2.1.940.444
1ay0TPPTransketolase 12.2.1.10.443
1gtrATPGlutamine--tRNA ligase6.1.1.180.443
1jtvTESEstradiol 17-beta-dehydrogenase 11.1.1.620.443
1qgyFADFerredoxin--NADP reductase1.18.1.20.443
1r58AO5Methionine aminopeptidase 2/0.443
1vbiNADMalate/L-lactate dehydrogenase family protein/0.443
2ehuNAD1-pyrroline-5-carboxylate dehydrogenase/0.443
2i4qUA4Renin3.4.23.150.443
3hxfBD9Geranylgeranyl transferase type-2 subunit beta2.5.1.600.443
3zbsOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.443
4lutDCSAlanine racemase/0.443
1a9cGTPGTP cyclohydrolase 13.5.4.160.442
1foaUD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase2.4.1.1010.442
1mzcBNEProtein farnesyltransferase subunit beta2.5.1.580.442
2ay95PVAromatic-amino-acid aminotransferase2.6.1.570.442
2cekN8TAcetylcholinesterase3.1.1.70.442
2rlcCHDCholoylglycine hydrolase3.5.1.240.442
3cavCI23-oxo-5-beta-steroid 4-dehydrogenase/0.442
3h3sH15Collagen type IV alpha-3-binding protein/0.442
3tr05GPGuanylate kinase/0.442
4c717RD3-oxoacyl-ACP synthase/0.442
4rvgTYDD-mycarose 3-C-methyltransferase/0.442
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.442
1ex75GPGuanylate kinase2.7.4.80.441
1je1GMPPurine nucleoside phosphorylase/0.441
1mmkH4BPhenylalanine-4-hydroxylase1.14.16.10.441
2e8uIPEGeranylgeranyl pyrophosphate synthase/0.441
2il2LIXRenin3.4.23.150.441
2ixkTDOdTDP-4-dehydrorhamnose 3,5-epimerase5.1.3.130.441
4dan2FAPurine nucleoside phosphorylase DeoD-type2.4.2.10.441
4qfyDCPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.441
4r81FMNPredicted NADH dehydrogenase/0.441
4xsvC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.441
1hb3SCVIsopenicillin N synthase1.21.3.10.440
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.440
1thnADPAnti-sigma F factor/0.440
1uzwCDHIsopenicillin N synthase1.21.3.10.440
1x1bSAHC-20 methyltransferase/0.440
2a1hGBNBranched-chain-amino-acid aminotransferase, mitochondrial2.6.1.420.440
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.440
2uxoTACHTH-type transcriptional regulator TtgR/0.440
2ydbNAP2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.440
3bgxMEFThymidylate synthase/0.440
4bqzGNPEctonucleoside triphosphate diphosphohydrolase 2/0.440
4kbyC2EStimulator of interferon genes protein/0.440